Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq90076 179 5e-40 seq51752 141 1e-28 seq47021 107 3e-18 seq47681 93.3 6e-14 >seq90076 Length=2428 Score = 179 bits (198), Expect = 5e-40 Identities = 393/583 (67%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 36272 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGT 36329 |||| |||||||| || || |||||||| |||| ||| | || | ||| | || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 ||||||| || |||||||| || || || || || || || ||||| | ||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | || |||||| | || | | || | |||||| || || ||||| || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | || || || || | || || | || || | ||| |||| | || || | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | | || ||| | || | || ||||| ||| | |||||||| |||||||| || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || ||||| | |||||| | | || ||||| ||||| || Sbjct 1478 TCTTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACAT 1436 >seq51752 Length=12828 Score = 141 bits (156), Expect = 1e-28 Identities = 259/374 (69%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 36272 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGT 36329 |||| |||||||| || || |||||||| |||| ||| | || | ||| | || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 ||||||| || |||||||| || || || || || || || ||||| | ||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 36510 TAATCTGTACTTCT 36523 | || |||||| Sbjct 150 CGACTTGGACTTCT 137 >seq47021 Length=9578 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| ||||| | || | || || | |||| | |||| || ||| || | ||| ||| Sbjct 3276 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCCA 3335 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||||| |||||| ||||||| |||||| |||||| Sbjct 3336 TTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGAG 3395 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | || || || || || ||| ||| | || || || || ||||||||||| Sbjct 3396 ACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 3455 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || |||||||| || ||||| Sbjct 3456 CCTTCGATACTATCTTCTTTCATG 3479 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| || || || | || ||||| || ||||| |||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | |||||| || || ||||| | ||| |||||||| | || || | ||| | Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||||||| ||||| || | ||| | | || || | ||| || | || | Sbjct 3728 ACATGTGCTGAGGCCTTTCCACAACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 3787 Query 66634 AAGTTTTAAAACCAAAATA 66652 |||||||| ||||| || Sbjct 3788 GGGTTTTAAAGCCAAAGTA 3806 >seq47681 Length=10123 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| || || | || | ||| |||| ||| | || | || |||||||| ||| ||| Sbjct 5060 CCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCCA 5119 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| || ||||| || || ||||| || || |||||||||| || || ||| Sbjct 5120 TTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGAG 5179 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || ||| || || |||||||| || Sbjct 5180 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATATT 5239 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 5240 CCTTCAATACTATCATCTTTCATG 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657135009583280