Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7711 102 8e-17 seq7293 93.3 4e-14 seq93401 86.0 6e-12 seq55405 86.0 6e-12 seq119983 82.4 8e-11 >seq7711 Length=5731 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||||||||||||||||| || |||| || || | ||| Sbjct 273 TGAAGGGTAGACTCTTTTTGAATGTTATAATCTGCCAAGGTGCGACCATCCTCCAACTGC 214 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||||| | || ||||| || || || ||||| ||||| ||| || Sbjct 213 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 154 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| ||| ||||| | ||| | ||||| || || Sbjct 153 GCCTTCACGTTATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATGGTCTTCCCTGTT 94 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | ||||| ||||||||||||||| Sbjct 93 AGGGTTTTGACGAATATTTGCATA 70 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | || | || || ||||| |||||| Sbjct 723 GTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTACCA 664 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | |||||||| || || || ||||||||||| ||| ||| || Sbjct 663 GCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTTTGCCTTG 604 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | ||||||||| | ||| | |||||| || ||||| || Sbjct 603 ACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGTCAAAGTC 544 Query 139748 TTTACGAATATTTGCATA 139765 || || ||||| |||||| Sbjct 543 TTAACAAATATCTGCATA 526 >seq7293 Length=4729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || ||||| || || ||||| |||||| | Sbjct 4475 CCACCACGGAGACGGAGAACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAATCGGCC 4416 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || || || |||||| ||||||||| || || || Sbjct 4415 AAAGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGGGGA 4356 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | || | | || | || |||| | ||| || Sbjct 4355 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGAC 4297 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 4296 CTCGAGAGTGATTGTCTTGCCGGTCAAAGTTTTCACGAAGATCTGCAT 4249 >seq93401 Length=1125 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || ||||| || ||||| |||||| || |||| ||||| | || Sbjct 1103 TGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAATTGC 1044 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| |||||||||||||| || ||||| || || ||| |||| Sbjct 1043 TTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAATTCCTTCCTTATC-TTGAATTTT 985 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | || || | ||| ||||||| ||| | |||||| ||||| Sbjct 984 GGCCTTGACGTTGTCGATCGTATCAGAACTCTCGACCTCAAGGGTAATCGTCTTCCCGGT 925 Query 139741 CAA-CGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 924 TANGGGTTTTGACGAAGATCTGCAT 900 >seq55405 Length=4719 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || ||||| ||||||||||| | || ||| ||||| Sbjct 2526 ACCAAGTGCAGTGTGGATTCCTTTTGGATGTTATAATCTGCAAGGGTCCTCCCATCTTCA 2585 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| | |||| | |||||||| || || ||||| ||||| || || Sbjct 2586 AGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGAATGCCCTCTTTATC-TTG 2644 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | |||| || | | || | |||||| | || ||||| | ||| || ||||| Sbjct 2645 AATCTTTGCCTTCACATTATCTATTGTGTCTGAACTTTCGACCTCCAAGGTGACTGTCTT 2704 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || || || || ||||||||| || Sbjct 2705 CCCAGTCAAAGTCTTCACAAAGATTTGCATACCT 2738 >seq119983 Length=969 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | || | || || ||||| |||||| Sbjct 383 GTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTACCA 324 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | |||||||| || || || ||||||||||| ||| ||| || Sbjct 323 GCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTTTGCCTTG 264 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | ||||||||| | ||| | |||||| || ||||| || Sbjct 263 ACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGTCAAAGTC 204 Query 139748 TTTACGAATATTTGCATA 139765 || || ||||| |||||| Sbjct 203 TTAACAAATATCTGCATA 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495281818686400