Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq90076 109 5e-19 seq51752 109 5e-19 >seq90076 Length=2428 Score = 109 bits (120), Expect = 5e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || ||||| || ||||| ||||| |||| || | |||||||| || ||| Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775 ||||| ||||| ||||| || ||||||| |||||||||||| || || | | || || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 1895 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 ||||||||| || || ||| || || |||||||| || Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 1856 >seq51752 Length=12828 Score = 109 bits (120), Expect = 5e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || ||||| || ||||| ||||| |||| || | |||||||| || ||| Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775 ||||| ||||| ||||| || ||||||| |||||||||||| || || | | || || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 387 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 ||||||||| || || ||| || || |||||||| || Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477834173144880