Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq35332 109 4e-19 seq4456 98.7 8e-16 seq95098 93.3 3e-14 seq106908 91.5 1e-13 seq55405 91.5 1e-13 seq7293 89.7 4e-13 seq9706 87.8 1e-12 seq119621 82.4 6e-11 seq61388 82.4 6e-11 >seq35332 Length=499 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | ||| | ||||| ||| ||||| || | ||||||||||| | Sbjct 244 CCACCACGGAGCCTGAGCACAAGATGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCC 185 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||||||| || || ||||| ||||||| || ||||| | || Sbjct 184 AAGGTACGGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCTTTGCTGATCCGGAGGA 125 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| || ||| |||||| | ||| || Sbjct 124 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACT 65 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || |||||||| ||||| || || || ||||| || Sbjct 64 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATATT 15 >seq4456 Length=3005 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || ||||| |||| || | ||| || ||||| || Sbjct 2873 TCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAAG 2814 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||| | || | || ||||| || |||| | ||||| || Sbjct 2813 ATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTG 2754 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || ||| | |||||| || | ||||| || || |||||||| |||||||| Sbjct 2753 TCGATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTTCACG 2694 Query 43099 AAAATTTGCATTTT 43112 || || ||||| || Sbjct 2693 AAGATCTGCATATT 2680 >seq95098 Length=1037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | || | ||| | ||| |||||| || | |||||||||| | Sbjct 619 CCTCCACGAAGCCTAAGGACGAGATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 678 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT-CGGCCGG 43001 | || || | ||||| | ||| ||||||||||||||||| || || || | | | || Sbjct 679 AGAGTGCGGCCATCGTCTAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGG 738 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| | || || | ||| ||| ||| | ||| || Sbjct 739 AATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTATCAATTGTATCGGAACTCTCAAC 798 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || || || ||||| ||||| |||||||||||||| Sbjct 799 TTCAAGAGTTATCGTCTTACCCGTTAGGGTTTTAACAAAAATTTGCAT 846 >seq106908 Length=1159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| ||| ||||| | || |||||||| || || ||||| Sbjct 6 TCCTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCTTCCAATTGCTTTCCTGCAAAG 65 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| || ||||| | || | ||| || || || |||| | ||||| || Sbjct 66 ATCAATCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 125 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGG-TTAGAGTTTTCAC 43097 ||| |||||| | ||| || || | || || || || |||| |||| ||||| || Sbjct 126 TCAATCGTGTCGGAACTCTCAACTTCGAGAGTGATGGTCTTGCCGGNTTAGGGTTTTGAC 185 Query 43098 AAAAATTTGCATTTT 43112 || || ||||| || Sbjct 186 GAAGATCTGCATATT 200 >seq55405 Length=4719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||| | ||| ||||||||| | ||||||||| | | Sbjct 2280 CCACCACGCAGGCGAAGGACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCC 2339 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||| ||| || || ||||| ||||| | ||| ||||| | || Sbjct 2340 AAAGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGA 2399 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | | || || | |||| ||||| | |||| || Sbjct 2400 ATCCCTTCCTTGTC-CTGAATTTTAGCCTTCACATTATCAACAGTGTCCGAACCCTCAAC 2458 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || | || || |||||||| |||||| Sbjct 2459 CTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAAATCTGCATT 2507 >seq7293 Length=4729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| || | ||||| |||| || |||||| || | ||||| |||| Sbjct 4703 CCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCA 4644 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| || || ||||| |||||||| | ||| || || | ||| Sbjct 4643 AGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGA 4584 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | || || || ||| |||||| | ||| || Sbjct 4583 ATTCCTTCCTTGTC-CTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAAC 4525 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| ||||| || || || || ||||| Sbjct 4524 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 >seq9706 Length=10732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||||||||| ||| || ||| |||| || | || ||||||||||| Sbjct 1022 CTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 1081 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | ||||| || || | || | || || || || ||| | | || || | Sbjct 1082 GATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 1141 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| || ||| || |||| ||| || || || || ||||| |||||||| Sbjct 1142 GTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTTTTCAC 1201 Query 43098 AAAAATTTGCATTTTCTT 43115 || || ||||| || || Sbjct 1202 GAAGATCTGCATCTTGTT 1219 >seq119621 Length=933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||| || | || ||||||||| | || || || | Sbjct 488 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 429 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| | || || | ||||||||| ||||||||||| | ||| || || | || Sbjct 428 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 369 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| || || || ||| | ||||| || ||| |||||| ||| || | Sbjct 368 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCG-GAGCTTTCCA 310 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 309 CTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||| || | || ||||||||| | || || || | Sbjct 363 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 422 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| | || || | ||||||||| ||||||||||| | ||| || || | || Sbjct 423 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 482 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| || || || ||| | ||||| || ||| |||||| ||| || | Sbjct 483 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCG-GAGCTTTCCA 541 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 542 CTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380783299300236