Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq90076 205 1e-47 seq51752 170 3e-37 seq47021 93.3 6e-14 seq47681 89.7 7e-13 >seq90076 Length=2428 Score = 205 bits (226), Expect = 1e-47 Identities = 420/619 (68%), Gaps = 8/619 (1%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| ||||||||||||||||| || ||||| |||| ||||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG-ATCCAGAAA 42179 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGT 42236 |||| |||||||| || || |||||||| |||| ||| | || | ||| | || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || |||||||| || || || ||||| || || ||||| | |||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || |||||| | || | | || | ||||||| || || ||||| || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536 | || || || || | || || | || || | ||| ||||| | || | | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | | | || ||| | || | || ||||| || |||||||||| ||||| || || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656 | || ||||| | |||||| | | || ||||| || || || || | | |||| Sbjct 1478 TCTTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACATGCAGAACCGGTCCGGAT 1419 Query 42657 TTGGTGCAAGGATCGGTTC 42675 | || ||||| | ||| || Sbjct 1418 TCGGAGCAAGAAGCGGCTC 1400 >seq51752 Length=12828 Score = 170 bits (188), Expect = 3e-37 Identities = 319/463 (69%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| ||||||||||||||||| || ||||| |||| ||||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG-ATCCAGAAA 42179 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGT 42236 |||| |||||||| || || |||||||| |||| ||| | || | ||| | || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || |||||||| || || || ||||| || || ||||| | |||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || |||||| | || | | || | ||||||| || || ||||| || Sbjct 150 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 91 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 | || || || || | || || | || || | ||| ||||| Sbjct 90 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTC 48 >seq47021 Length=9578 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | || || | |||| | |||| || ||| || | ||| ||| Sbjct 3276 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCCA 3335 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||||| |||||| | ||||| ||||| |||||| Sbjct 3336 TTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGAG 3395 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || || || || || ||| ||| | || || || || ||||||||||| Sbjct 3396 ACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 3455 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || |||||||| || ||||| Sbjct 3456 CCTTCGATACTATCTTCTTTCATG 3479 >seq47681 Length=10123 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | || | ||| |||| ||| | || | || |||||||| ||| ||| Sbjct 5060 CCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCCA 5119 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||| | ||||| || || ||||| || || | |||||||| ||| || ||| Sbjct 5120 TTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGAG 5179 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || ||| || || |||||||| || Sbjct 5180 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATATT 5239 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 5240 CCTTCAATACTATCATCTTTCATG 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670080964487920