Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq93401 93.3 4e-14 seq35333 86.0 6e-12 seq95098 84.2 2e-11 >seq93401 Length=1125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || |||||||| || |||||||||||| || |||| ||||| | ||| Sbjct 1104 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAATTG 1045 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || || |||||||||| |||||||||||||| || ||||| || || |||||| Sbjct 1044 CTTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAATTCCTTCCTTATCTTGAATTTT 985 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||| || | || || |||| || | |||||| ||||| Sbjct 984 GGCCTTGACGTTGTCGATCGTATCAGAACTCTCGACCTCAAGGGTAATCGTCTTCCCGGT 925 Query 143161 CAA-TGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 924 TANGGGTTTTGACGAAGATCTGCAT 900 >seq35333 Length=5286 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| |||||||| | ||| | ||||| || ||||||||||| ||||| || ||| Sbjct 193 GCCTCCACGTAAACGAAGAACCAGATGAAGAGTTGATTCTTTTTGGATGTTATAGTCGGC 134 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||| | ||| || || ||| |||||| | |||||| || || || Sbjct 133 CAAGGTCCGGCCGTCTTCCAATTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGCGG 74 Query 143077 TATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 73 GATTCCTTCCTTGTC 59 >seq95098 Length=1037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | ||||||| || | || | |||||||| || |||||||||||||| Sbjct 390 CCTCCCCTCAAACGCAGGACCAGGTGGAGAGTAGATTCCTTCTGTATGTTGTAATCTGCA 449 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || ||||| |||||| |||||||||| |||||||| || || Sbjct 450 AGGGTCCTGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 509 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||| || | | || | |||||| | | ||| ||| Sbjct 510 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACT 569 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG-AATATTTGCAT 143184 || | || | ||||| || || | || || || || |||||||| Sbjct 570 TCCAAGGTGATTGTCTTACCAGTGAGGGTCTTAACNAAAAATTTGCAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506214952369440