Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq90076 127 3e-24 seq51752 107 3e-18 >seq90076 Length=2428 Score = 127 bits (140), Expect = 3e-24 Identities = 386/582 (66%), Gaps = 16/582 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| || ||| | | || ||||| |||||||| || || |||| || |||| Sbjct 1437 TGTTTCCGATTCAGTACCCGCAAATCTGGGAGATGTACAAGAAAGCCGAGGCATCGTTTT 1496 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || || ||||| |||| |||| || | ||||| | | | ||| Sbjct 1497 GGACGGCGGAGGAAGTCGACTTGTCGCAGGATCTCCGTCACTGGGAAAGCCTTACCTCTG 1556 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || || | ||| | | |||||||| |||| |||||| || |||| Sbjct 1557 AC---GAGAAACACTTCATTACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 1613 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTG 125233 | ||| ||||| | | || | ||| |||| | | | || | |||| || | Sbjct 1614 TTCTCGAAAATCTCGCCGCCAGG-TTCATGAAAGAAGTC-CAAGTCGCCGAGGCC-CGCG 1670 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || ||||| ||| || |||||| | ||||| ||||||||||| || Sbjct 1671 CCTTCTATGGCTTCCAGATCGCAATCGAGAACATTCACTCCGAAATGTACTCCCTTCTCC 1730 Query 125293 TTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| || |||| || || || ||||| ||| ||||| ||| Sbjct 1731 TCGAAACCTACATCAAAGACTCCG-AAGAAAAGAACCACCTCTTCCGCGCCATCGAAACG 1789 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 ||||||| | |||||||| | |||| | |||||||| | | | || | Sbjct 1790 GTGCCGTGCGTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGATCGACGGCTCCGAGACA 1849 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG- 125470 | ||| || |||| | || ||||| ||| || || || ||||| ||||| || Sbjct 1850 TT---CGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGC 1906 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||||||| | || |||||||| || ||||||||| | ||||| ||| | || | || Sbjct 1907 TTTTGCG-CAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAA 1965 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| || || ||||||||||| || ||||| || || || Sbjct 1966 CGAGTTAATCTCGCGAGACGAGGGACTTCACTGCGATTTCGC 2007 >seq51752 Length=12828 Score = 107 bits (118), Expect = 3e-18 Identities = 232/341 (68%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| || || ||||| ||| || |||||| | ||||| ||||||||||| || | Sbjct 164 CTTCTATGGCTTCCAGATCGCAATCGAGAACATTCACTCCGAAATGTACTCCCTTCTCCT 223 Query 125294 TGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 || | ||||| || |||| || || || ||||| ||| ||||| |||| Sbjct 224 CGAAACCTACATCAAAGACTCCG-AAGAAAAGAACCACCTCTTCCGCGCCATCGAAACGG 282 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 |||||| | |||||||| | |||| | |||||||| | | | || | | Sbjct 283 TGCCGTGCGTCGCCAAAAAGGCCAAGTGGGCCCTCGATTGGATCGACGGCTCCGAGACAT 342 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-T 125471 ||| || |||| | || ||||| ||| || || || ||||| ||||| || | Sbjct 343 T---CGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCT 399 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 |||||| | || |||||||| || ||||||||| | ||||| ||| | || | ||| Sbjct 400 TTTGCG-CAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAAC 458 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| || || ||||||||||| || ||||| || || || Sbjct 459 GAGTTAATCTCGCGAGACGAGGGACTTCACTGCGATTTCGC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739890716379920