Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq95098 120 2e-22 seq119621 104 2e-17 seq87541 104 2e-17 seq61388 104 2e-17 seq35333 98.7 7e-16 seq7711 93.3 3e-14 seq93401 91.5 1e-13 seq55405 87.8 1e-12 seq7293 84.2 2e-11 >seq95098 Length=1037 Score = 120 bits (132), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || ||||||||||||||| ||| | | | || |||| ||| Sbjct 642 ATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAGAGTGCGGCCATCGTCTAGTTG 701 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGT-CGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 ||||| || | ||||||||||| |||| | ||||||||||| || || ||| | Sbjct 702 CTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGGAATTCCTTCCTTATCTTGAATCT 761 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 |||| ||| ||| | || || |||||| | | || || || | || || || ||||| Sbjct 762 TTGC-CTTAACATTATCAATTGTATCGGAACTCTCAACTTCAAGAGTTATCGTCTTACCC 820 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| ||||||||||||||| Sbjct 821 GTTAGGGTTTTAACAAAAATTTGCATA 847 >seq119621 Length=933 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| ||||| || || ||| | | | || || Sbjct 469 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 410 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| | || ||||| ||| || || || ||||| Sbjct 409 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 350 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || ||||| ||| |||| || || || || || |||||| Sbjct 349 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 290 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||| ||||||||| Sbjct 289 CCAGTCAGGGTTTTTACAAAGATTTGCATA 260 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || ||||||||||| ||| | || | || || | ||| Sbjct 920 ATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTG 861 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | ||||| | || ||||| |||||| || || || || || || Sbjct 860 CTTCCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGAATCCCCTCCTTATCCTGTATCTT 801 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || || || || | | || || || ||||| |||||||| ||||| Sbjct 800 GGCTTTCACATTGTCAATTGTGTCAGAACTCTCCACCTCCAAGGTGATGGTTTTTCCTGT 741 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||||||| |||||| Sbjct 740 AAGAGTCTTCACAAAAATCTGCATA 716 >seq87541 Length=1860 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| || ||||| || || || || |||||||| ||| ||| |||| |||| || Sbjct 6 ACTAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCG 65 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | || | ||| |||||||| ||||||||||| ||||| Sbjct 66 AGCTGCTTCCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGG 125 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| | || |||||||| | || || |||||||| ||||| || Sbjct 126 ATCTTGGTCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTTC 185 Query 15335 CCTGTCAGAG--TTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 || || || | |||| || || || ||||| ||| | || || Sbjct 186 CCCGTTAGGGNNTTTTCACGAAGATCTGCATGGTTGCAGATGAA 229 >seq61388 Length=1455 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| ||||| || || ||| | | | || || Sbjct 382 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 441 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| | || ||||| ||| || || || ||||| Sbjct 442 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 501 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || ||||| ||| |||| || || || || || |||||| Sbjct 502 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 561 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||| ||||||||| Sbjct 562 CCAGTCAGGGTTTTTACAAAGATTTGCATA 591 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || ||||| || || || | | | || || | |||| Sbjct 844 TGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGT 903 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | ||||| | ||| ||||| ||| || ||||| ||||| |||||| Sbjct 904 TTGCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATTTTT 963 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || ||||| ||| |||| || || | || || || || || || Sbjct 964 GCCTTTACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTTCCAGTG 1023 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| |||||||| Sbjct 1024 AGGGTTTTTACAAAGATTTGCAT 1046 >seq35333 Length=5286 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | ||| | ||||| || || || || || ||||||||||| Sbjct 420 CCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTGCA 361 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | |||||||||||| | |||| ||| || || || ||| Sbjct 360 AGGGTCCTGCCATCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGTGGG 301 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| ||| ||| | || || || ||| | | || || Sbjct 300 ATTCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCGGAACTCTCCACC 241 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || |||||||| || || ||||| || || || ||||| Sbjct 240 TCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCAT 194 >seq7711 Length=5731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || || |||||||| ||| | ||| | || || | || Sbjct 501 TGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGCTGC 442 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| || || || |||||||||||| ||||| ||| ||| Sbjct 441 TTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGAATCTTG 382 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | || || ||||| | || || || || ||||| ||||| |||||| Sbjct 381 GCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTGTTTTCCCTGTC 322 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || |||||| Sbjct 321 AGGGTCTTAACAAAGATCTGCATA 298 >seq93401 Length=1125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || |||||||||||| | | | | ||||| ||||| Sbjct 1104 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAATTG 1045 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || || ||| ||||||||||| || || |||||| Sbjct 1044 CTTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAATTCCTTCCTTATCTTGAATTTT 985 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || || ||||| | | || || || | |||||| || || || || Sbjct 984 GGCCTTGACGTTGTCGATCGTATCAGAACTCTCGACCTCAAGGGTAATCGTCTTCCCGGT 925 Query 15340 CA-GAGTTTTTACAAAAATTTGCAT 15363 | | ||||| || || || ||||| Sbjct 924 TANGGGTTTTGACGAAGATCTGCAT 900 >seq55405 Length=4719 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||| || || || | | | | || || Sbjct 3210 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGCCCATCCTCC 3269 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACA 15273 | ||| || ||||| | || | | || ||||| ||| || ||||| || | | Sbjct 3270 AGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTATCCTGG 3329 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || ||| | || ||||| ||| |||| || || | ||| ||||| || Sbjct 3330 ATTTTTGCT-TTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTT 3388 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| |||||||| ||||| |||||||| Sbjct 3389 ACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 >seq7293 Length=4729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || || || |||||||| ||| || | | | ||||| Sbjct 4686 AACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCTTC 4627 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || ||| | ||||| | || ||||| ||||||||||| ||||| Sbjct 4626 CAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTG 4567 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| || | || ||||| ||| | | || || || | || ||||| || Sbjct 4566 AATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACCTCAAGAGTGATGGTCTT 4507 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || |||||| Sbjct 4506 GCCGGTCAGAGTCTTAACGAAGATCTGCATA 4476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361622401769622