Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq67990 96.9 3e-15 seq9706 91.5 1e-13 seq55405 89.7 4e-13 seq7711 86.0 5e-12 >seq67990 Length=6038 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||||| |||| ||| | ||| |||||||||||||| |||||||| | Sbjct 4580 TTCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTG 4521 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || |||| |||||||| ||| |||| | ||||||||||||| | Sbjct 4520 CAAGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAG 4461 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||| ||||| Sbjct 4460 GGATACCCTCCTTGTC 4445 >seq9706 Length=10732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| || |||||||| |||||||||||||| |||| || ||||||| Sbjct 1004 CACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTC 1063 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || | |||||| ||| || | ||||| ||||| Sbjct 1064 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTG 1123 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | ||| || || || |||| || | |||||||| || Sbjct 1124 AATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTT 1183 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||| ||||| || || || ||||| || Sbjct 1184 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1216 >seq55405 Length=4719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| |||||||||||||| ||||||||||| |||| || | |||||||| || Sbjct 2304 TGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTGC 2363 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | || | ||||||||||| || | || || ||||| |||||| Sbjct 2364 TTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTA 2423 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | ||||| || | ||| || | ||| || ||||| || || Sbjct 2424 GCCTTCACATTATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTTTTTCCAGTC 2483 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||| |||||| Sbjct 2484 AAGGTCTTAACAAAAATCTGCATT 2507 >seq7711 Length=5731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | || || ||||| ||||||||||||||||| | || | | ||| Sbjct 510 AACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCC 451 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| || || ||| |||| | | |||||||||| || | || || ||||| Sbjct 450 TCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCC 391 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | | ||||| |||| || | ||||| ||| Sbjct 390 TGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTGTT 331 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | || || ||||| || ||||| Sbjct 330 TTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413935454173948