Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq95098 93.3 3e-14 >seq95098 Length=1037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| || ||||| || ||||| |||||||| | || | || | || || | ||| Sbjct 642 ATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAGAGTGCGGCCATCGTCTAGTTG 701 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCC-GTGGGTATGCCTTCTTTTTCGCTAATC- 33283 ||| || ||| || ||||||||||||||| | ||| || ||||| || || |||| Sbjct 702 CTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGGAATTCCTTCCTTATCTTGAATCT 761 Query 33284 --GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTC 33341 ||| || || | | ||| || ||| | ||| || ||||||||||| || | Sbjct 762 TTGCC---TTAACATTATCAATTGTATCGGAACTCTCAACTTCAAGAGTTATCGTCTTAC 818 Query 33342 CCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || ||||| || ||||||||||| Sbjct 819 CCGTTAGGGTTTTAACAAAAATTTGCAT 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318287525463516