Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq55405 84.2 2e-11 seq95098 82.4 5e-11 >seq55405 Length=4719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | || ||| | |||||| || || ||| || ||||| || |||||||| | Sbjct 2508 CCTCCGCGCAGTCTCAGCACCAAGTGCAGTGTGGATTCCTTTTGGATGTTATAATC-TGC 2566 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| || | || || |||||||| ||||||| ||||| || | || Sbjct 2567 AAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGG 2626 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| ||| ||| || || || | | || |||| || || Sbjct 2627 AATGCCCTCTTTATCTTGAATCTTTGCCTTCACATTATCTATTGTGTCTGAACTTTCGAC 2686 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || | ||| || || || |||||||||||||| |||||||| Sbjct 2687 CTCCAAGGTGACTGTCTTCCCAGTCAAAGTCTTCACAAAGATTTGCAT 2734 >seq95098 Length=1037 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATT 43976 ||| || ||| ||| || || || || |||||| | | || || ||||||| | || Sbjct 642 ATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAGAGTGCGGC-CATCGTCTAGTT 700 Query 43977 GTTTTCCTGCAAATATCAACCGTTGCTGGTCCT-GAGGTACACCTTCTTTATCTGAAATT 44035 | || || ||||| ||||| |||||||||||| | || | ||||| |||||| ||| Sbjct 701 GCTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGGAATTCCTTCCTTATCTTGAATC 760 Query 44036 TTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 ||| || || || ||| ||||| | ||| || || | || || || ||||| Sbjct 761 TTTGCCTTAACATTATCAATTGTATCGGAACTCTCAACTTCAAGAGTTATCGTCTTACCC 820 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| |||||||| Sbjct 821 GTTAGGGTTTTAACAAAAATTTGCAT 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354232180661016