Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7293 100 2e-16 seq55405 89.7 4e-13 seq7711 87.8 2e-12 seq35333 86.0 5e-12 seq4456 82.4 6e-11 >seq7293 Length=4729 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| ||| || | Sbjct 4440 CTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAA 4381 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || ||||| ||||| || || | || ||||||||| ||| || ||||| Sbjct 4380 GATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTT 4321 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| ||| ||||| || || || || ||||| | ||||||||| Sbjct 4320 ATCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATTGTCTTGCCGGTCAAAGTTTTCAC 4261 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 4260 GAAGATCTGCATC 4248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| ||| | || || || || || |||||| ||||||||||| || | Sbjct 4704 ACCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTC-GG 4646 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || | || |||| |||||| ||| || |||| || | |||||| ||| || Sbjct 4645 CAAGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCG 4586 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| ||| || ||| | | ||||| |||| | ||| Sbjct 4585 GAATTCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAA 4526 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| ||||| || || || |||||||| Sbjct 4525 CCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 >seq55405 Length=4719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||| || ||||| || ||||| || ||| ||| | ||||| Sbjct 3210 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC-AAGTGTGCGCCCATCCTC 3268 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| |||||||| | | || | | |||||| || || | | |||||| ||| Sbjct 3269 CAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTATCCTG 3328 Query 48637 AATTTTCTGCTT-GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||||| || | | ||||| |||| || ||| | |||||||| | Sbjct 3329 GATTTT-TGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCT 3387 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||||||||| ||||| || |||||| Sbjct 3388 TACCTGTGAGAGTTTTAACAAAGATTTGCATC 3419 >seq7711 Length=5731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTC 48573 ||||| | ||||| || ||||| ||||| |||||||| || || ||| | | || Sbjct 510 AACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGC-AAGAGTCCTCCCATC 452 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || | |||| ||||||||||||||| || | | ||||||||| Sbjct 451 CTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTC 392 Query 48634 CATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 | ||| || |||| | | | | || ||||| | |||| ||| | || || | Sbjct 391 CTGAATCTT-GGCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTG 333 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || || ||||| |||||||| Sbjct 332 TTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq35333 Length=5286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGT 48593 ||||| |||||||||||||| || || ||| || | ||||| ||||| || || || Sbjct 384 TCCTTCTGAATGTTGTAATCTGC-AAGGGTC-CTGCCATCCTCAAGCTGTTTGCCAGCGA 327 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | | |||||| ||| ||||| ||| | | Sbjct 326 AGATCAGACGCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGGATTTTGGCCTTAACAT 267 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || || |||| | |||| ||| | || || |||||||| ||||| ||||| | Sbjct 266 TATCAATTGTGTCGGAACTCTCCACCTCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAA 207 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 206 CGAAGATCTGCAT 194 >seq4456 Length=3005 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| ||||| |||||||| |||| ||| |||| || || || Sbjct 2886 ATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTG 2827 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || |||||||||||| || | | || ||||| || || Sbjct 2826 CTTTCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTT 2767 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || ||||||| | ||| || | |||||||| || ||| Sbjct 2766 GGCCTTGACGTTGTCG--ATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCG 2709 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| || |||||||| Sbjct 2708 GTTAGGGTTTTCACGAAGATCTGCAT 2683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420603587098142