Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq36294 114 7e-21 seq58269 111 8e-20 seq15925 107 1e-18 seq101956 104 1e-17 seq90918 104 1e-17 seq44278 104 1e-17 seq19878 104 1e-17 seq14225 104 1e-17 seq90252 102 4e-17 seq106656 100 1e-16 seq91167 100 1e-16 seq77250 96.9 2e-15 seq58267 96.9 2e-15 seq47441 96.9 2e-15 seq18305 95.1 6e-15 seq58273 93.3 2e-14 seq55275 91.5 8e-14 >seq36294 Length=1872 Score = 114 bits (126), Expect = 7e-21 Identities = 87/102 (85%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | | |||||| |||| || || || |||||||| | | |||||||| |||||||| Sbjct 588 AAAGAAAAAATTAAAAAAATATTAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 529 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 528 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 487 >seq58269 Length=5107 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1135 AAAAAAT---ATTGGCCCATGGAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1191 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1192 GCTCTAACCAACTGAGCTAATAGGCC 1217 >seq15925 Length=3685 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1674 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 1615 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 1614 ACTGAGCTAATAGGCC 1599 >seq101956 Length=807 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 609 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 668 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 669 TGAGCTAATAGGCC 682 >seq90918 Length=1001 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 522 AAATAATTAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 463 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 462 GCTCTGACCAGCTGAGCTAATAGGCC 437 >seq44278 Length=4419 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4099 AAATAATTAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 4040 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 4039 GCTCTGACCAGCTGAGCTAATAGGCC 4014 >seq19878 Length=5316 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1349 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1290 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1289 TGAGCTAATAGGCC 1276 >seq14225 Length=13183 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| | |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1675 ATAAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1732 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| || ||||||||||| |||| Sbjct 1733 ACGCTCTAACACACTGAGCTAATAGGCC 1760 >seq90252 Length=2068 Score = 102 bits (112), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 1617 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCCAC 1676 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | ||||| Sbjct 1677 TGAGCTAATAGGCC-TAGACGA 1697 >seq106656 Length=1524 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 140 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 81 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 80 TGAGCTAATAGGCC 67 >seq91167 Length=1110 Score = 100 bits (110), Expect = 1e-16 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTT-CGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1019 TTGGCCCATGCAGGTCTCGAACCTNGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 960 Query 11514 ACTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 959 GCTGAGCTAATAGGCCGT 942 >seq77250 Length=9095 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 129 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACACG 188 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 189 CTGAGCTAATAGGCCGT 205 >seq58267 Length=11521 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 8320 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACA 8379 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 8380 CGCTGAGCTAATAGGCC 8396 >seq47441 Length=1576 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || || Sbjct 708 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACACAC 767 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | ||||| Sbjct 768 TGAGCTAATAGGCC-TAGACGA 788 >seq18305 Length=22481 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || || Sbjct 20949 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACACAC 21008 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 21009 TGAGCTAATAGGCC 21022 >seq58273 Length=3535 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1990 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACACG 2049 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2050 CTGAGCTAATAGGCC 2064 >seq55275 Length=4893 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || | Sbjct 382 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACACGC 441 Query 11516 TGAGCTAATGGGCC-GTCG 11533 ||||||||| |||| |||| Sbjct 442 TGAGCTAATAGGCCAGTCG 460 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261089195032792