Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq87025 138 2e-28 seq67226 138 2e-28 seq117319 129 9e-26 seq29730 129 9e-26 seq4864 120 5e-23 >seq87025 Length=1631 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| |||| | || || || |||||||| |||||||| || ||||| || || Sbjct 473 GCGAAACGTCACCGCAAGGTC-CTCCGTGATAACATTCAAGGAATTACAAAGCCTGCAAT 531 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| | ||||| ||||||||| || || ||| ||||||| || | Sbjct 532 CCGGCGGTTGGCTCGTAGGGGTGGGGTCAAGCGTATCAGCGGCTTGATCTATGAGGAAAC 591 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||||||||||||| | ||| || |||| ||||| | || || || Sbjct 592 TCGTGGGGTTTTGAAGATCTTTTTGGAGAATGTGATCCGGGATGCCGTGACTTACACGGA 651 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || || | |||||| |||| ||||| | || | || || Sbjct 652 GCACGCCAGGAGGAAGACGGTGACGGCAATGGATGTCGTGTATGCGCTCAAGAGGCAGGG 711 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||| || ||||| ||||| Sbjct 712 CAGGACTCTTTACGGGTTTGGGGGTTAA 739 >seq67226 Length=1139 Score = 138 bits (152), Expect = 2e-28 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| || | | || ||||| |||||||||||||| || || ||||| || || Sbjct 358 GCTAAGCGTCACCGTAAGGTC-CTTCGTGATAACATCCAAGGGATTACAAAGCCTGCAAT 300 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| | ||||| ||||||||| || || ||| |||| || |||| Sbjct 299 TCGGCGTTTGGCTCGCAGAGGTGGTGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 240 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||||| ||| | ||| ||| || | |||||| | ||| || || Sbjct 239 GCGTGGTGTTCTAAAGATATTCTTGGAGAACGTCATACGTGATGCGGTGACCTACACTGA 180 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||||||| || | |||||| |||| || || | || | || || Sbjct 179 GCACGCCAGGAGAAAGACTGTGACGGCGATGGATGTCGTGTACGCTCTTAAGAGGCAGGG 120 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 119 AAGAACTCTGTATGGGTTTGGGGGTTAA 92 >seq117319 Length=1663 Score = 129 bits (142), Expect = 9e-26 Identities = 192/269 (71%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| || || || ||||| |||||||||||||| || || ||||| || || Sbjct 625 GCTAAGCGTCACCGTAAGGTC-CTTCGTGATAACATCCAAGGGATTACAAAGCCTGCAAT 683 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | ||||| | ||||| ||||||||| || || ||| |||| || |||| Sbjct 684 TCGGCGTTTAGCTCGCAGAGGTGGTGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 743 Query 16552 TCGTGATGTT-TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | ||||| ||| | ||| ||| || | |||||| | ||| || | Sbjct 744 GCGTGGTGTTCTNAAAGATATTCTTGGAGAACGTCATACGTGATGCGGTGACCTACACTG 803 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | | |||||||| || | |||||| |||| || || | || | || | Sbjct 804 AGCACGCCAGGAGAAAGACTGTGACGGCGATGGATGTCGTGTACGCTCTTAAGAGGCAGG 863 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | ||||| ||||| ||||| Sbjct 864 GAAGAACTCTGTATGGGTTTGGGGGTTAA 892 >seq29730 Length=2816 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| || ||| | | ||||| | ||||||||||| Sbjct 2083 GATAACATTCAGGGTATCACGAAGCCGGCGATCAGAAGGCTGGCGAGGCGTGGTGGAGTG 2024 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || |||| ||||| ||| |||||||||| || || Sbjct 2023 AAGCGTATCAGCGGTCTGATCTACGAGGAGACTCGTGGAGTTCTGAAGATCTTTCTGGAG 1964 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||| | || || ||||||||| || ||||||||||| | Sbjct 1963 AATGTGATTCGAGATGCGGTGACTTACACTGAGCACGCTCGTCGCAAGACTGTCACTGCA 1904 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| ||||||| |||||||| | || ||| | | | || ||||| || |||| Sbjct 1903 ATGGATGTCGTCTACGCATTGAAGAGGCAGGGCAGGACTCTCTACGGTTTCGGTGGTTA 1845 >seq4864 Length=10368 Score = 120 bits (132), Expect = 5e-23 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| ||||| || || || ||| |||| | | || || Sbjct 3751 CGTGATAACATCCAGGGTATCACAAAGCCGGCCATTCGCCGTTTGGCCAGAAGAGGAGGC 3692 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | || || || |||| || |||| ||||| || | ||||| ||||| Sbjct 3691 GTGAAGAGAATCAGCGGTCTGATCTACGAGGAGACTCGTGGCGTCCTTAAGATTTTCCTG 3632 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || ||| | ||| || |||||||| | ||||||||||| ||| Sbjct 3631 GAGAACGTGATTCGCGACGCTGTGACCTACACTGAGCACGCCAGGCGTAAGACTGTTACC 3572 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | |||||||| |||| | || ||| | | | || ||||| ||| || Sbjct 3571 GCCATGGATGTAGTCTATGCGCTGAAGAGGCAGGGCAGGACTCTCTACGGTTTCGGAGGT 3512 Query 16697 TAAT 16700 |||| Sbjct 3511 TAAT 3508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78959867486406