Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq90076 100 3e-16 seq51752 100 3e-16 >seq90076 Length=2428 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||| ||||| ||||| || || | || || || | ||||| || || || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || ||||||||||| | |||||||| ||||||||||| |||||| || ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGT 21639 |||| || || || ||| ||| || |||| || ||| || || |||| Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGT 1847 >seq51752 Length=12828 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||| ||||| ||||| || || | || || || | ||||| || || || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || ||||||||||| | |||||||| ||||||||||| |||||| || ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGT 21639 |||| || || || ||| ||| || |||| || ||| || || |||| Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531062112116080