Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq90076 196 6e-45 seq51752 159 4e-34 seq47021 86.0 8e-12 >seq90076 Length=2428 Score = 196 bits (216), Expect = 6e-45 Identities = 382/559 (68%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| ||||||||||||||||| || |||||||||| |||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCAGAAA 33418 | ||| ||||||| || |||||||| ||||||||||| | || || | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 33475 |||| |||||||| || ||| |||||||| |||| ||| | || | ||| || || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 ||||||| || |||||||| || || || ||||| || || ||||| | ||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | || |||||| | || | | || | |||||| || || ||||| || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 | || || || || | || || | || || | ||| ||||| | || || | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | | | || ||| | || | || ||||| ||| | |||||||| |||||||| || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 33836 TTTTATACATGTTCCAGAT 33854 | || ||||| | |||||| Sbjct 1478 TCTTGTACATCTCCCAGAT 1460 >seq51752 Length=12828 Score = 159 bits (176), Expect = 4e-34 Identities = 263/374 (70%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| ||||||||||||||||| || |||||||||| |||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCAGAAA 33418 | ||| ||||||| || |||||||| ||||||||||| | || || | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 33475 |||| |||||||| || ||| |||||||| |||| ||| | || | ||| || || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | ||||| | | ||||| | |||||| || || || |||| |||||| |||| Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | ||||| | ||| ||||| | ||||| | || || |||| | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 ||||||| || |||||||| || || || ||||| || || ||||| | ||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 33656 TAATCTGTACTTCT 33669 | || |||||| Sbjct 150 CGACTTGGACTTCT 137 >seq47021 Length=9578 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| || || || | || ||||| || ||||| |||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | |||||| || || ||||| | ||| |||||||| | || || | ||| | Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||||||| ||||| || | ||| | | || || | ||| || | || | Sbjct 3728 ACATGTGCTGAGGCCTTTCCACAACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 3787 Query 63790 AAGTTTTAAAACCAAAATA 63808 |||||||| ||||| || Sbjct 3788 GGGTTTTAAAGCCAAAGTA 3806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621964952428720