Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq95098 93.3 4e-14 seq61388 89.7 5e-13 seq119983 86.0 6e-12 seq7711 86.0 6e-12 >seq95098 Length=1037 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| |||||||| ||||| ||||||||||| || || | | ||| |||||||||||| Sbjct 981 GACAAGGAAGGGATTCCTCCGGATCAACAAAGGCTGATCTTTGCCGGAAAACAACTCGAA 922 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | || | || || || ||||||||||| ||||| || |||| || || || Sbjct 921 GATGGCCG-TACTTTGGCGGATTACAACATTCAAAAGGAATCAACCCTCCACCTTGTGCT 863 Query 26981 GAGACTTAGAGGAGG 26995 || ||| | ||||| Sbjct 862 CAGGCTTCGCGGAGG 848 >seq61388 Length=1455 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | |||||||| | ||||| | || | ||| | Sbjct 1046 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACTATCACTCTTGAGGTGGAAAGCTCC 987 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||| ||| ||||| |||||||| || || || || Sbjct 986 GACACCATCGACAATGTAAAGGCAAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 927 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | || | | ||||||||||| || |||| | | | | ||||||||| Sbjct 926 CAAAGGTTGATCTTTGCTGGCAAACAACTTGAGGATGGACGTACCCTTGCTGACTATAAC 867 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || | || |||||||| Sbjct 866 ATCCAGAAGGAGTCAACCCTTCACCTGGTCCT 835 >seq119983 Length=969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || ||||| |||||||| | || | || Sbjct 187 ATGCAGATATTTGTTAAGACTTTGACAGGAAAGACGATCACCTTGGAGGTGGAGAGTTCT 246 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| |||||| |||||||||||||| || || ||||| Sbjct 247 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAAGGGATTCCACCAGATCAG 306 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || || || || || |||| | | | | ||||||||| Sbjct 307 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTATAAC 366 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||| ||||||| ||||| Sbjct 367 ATTCAGAAGGAGTCCACTCTCCATCTTGTCCT 398 >seq7711 Length=5731 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || ||||| |||||||| | || | || Sbjct 527 ATGCAGATATTTGTTAAGACTTTGACAGGAAAGACGATCACCTTGGAGGTGGAGAGTTCT 586 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| |||||| |||||||||||||| || || ||||| Sbjct 587 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAAGGGATTCCACCAGATCAG 646 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || || || || || |||| | | | | ||||||||| Sbjct 647 CAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTATAAC 706 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||| ||||||| ||||| Sbjct 707 ATTCAGAAGGAGTCCACTCTCCATCTTGTCCT 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477907657094240