Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq55405 104 2e-17 seq7711 98.7 9e-16 seq93401 93.3 4e-14 >seq55405 Length=4719 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 |||||| | ||||| || || || ||||| || | | ||| | || ||||| | || Sbjct 2734 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAGACAGTCACCTTGGAGGTCGAAAGTTCA 2675 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| || || | || || ||||||| || ||||| ||||| || || |||| Sbjct 2674 --GACACAATAGATAATGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCAGATC 2617 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||||| |||||| | |||||||| || ||||||| || | | | ||||||| Sbjct 2616 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTATA 2557 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| ||||| ||||| ||| | || || ||| | ||| || | |||||| Sbjct 2556 ACATCCAAAAGGAATCCACACTGCACTTGGTGCTGAGACTGCGCGGAGGA 2507 >seq7711 Length=5731 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || || | |||||| |||| |||||| | Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||| ||||| ||||| || || || |||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || ||||| | || |||| | | | | ||||||||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||| ||||| ||||| Sbjct 251 ATTCAAAAAGAGTCTACCCTTCAT 274 >seq93401 Length=1125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACA-TTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||| | || || ||||| |||| || || |||||||| | || |||||| Sbjct 900 ATGCAGATCTTCGTCAAAACCCNTAACCGGGAAGACGATTACCCTTGAGGTCGAGAGTTC 959 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| || ||| || || ||||| || ||||||||||| Sbjct 960 TGATACGATCGACAACGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCCGATCA 1019 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | || ||| |||||| | ||||||| | | | | | |||||| || Sbjct 1020 GCAGCGTCTGATCTTCGCCGGGAAGCAATTGGAAGATGGCCGCACCTTGGCCGATTACAA 1079 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || |||||||| || ||||| Sbjct 1080 CATCCAGAAAGAATCCACTCTTCAT 1104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429275035472010