Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq7711 96.9 3e-15 seq55405 84.2 2e-11 >seq7711 Length=5731 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| || |||||||| || || || || ||||||||| |||| || |||| | Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTC- 129 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||||| ||| | || || || || || || ||||| |||| |||| Sbjct 130 -CGACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATC 188 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || ||||| || | ||| || || || || || |||| ||| |||| ||||||| Sbjct 189 AACAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATA 248 Query 115464 ACATTCAAAAAGAGTCTAC 115482 ||||||||||||||||||| Sbjct 249 ACATTCAAAAAGAGTCTAC 267 >seq55405 Length=4719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||| ||| | || |||||||| || | |||| ||| ||||| || | ||| Sbjct 2641 GATAAAGAGGGCATTCCACCAGATCAGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAA 2582 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || ||||||||||| ||||| || || || | || ||||| || Sbjct 2581 GATGGGAGGACCCTTGCAGATTATAACATCCAAAAGGAATCCACACTGCACTTGGTGCTG 2522 Query 115499 AGATTGCGAGGAGGAA 115514 ||| |||| ||||||| Sbjct 2521 AGACTGCGCGGAGGAA 2506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424690095009040