Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq119621 98.7 8e-16 seq61388 96.9 3e-15 seq7293 89.7 4e-13 seq95098 86.0 5e-12 seq67990 84.2 2e-11 seq55405 82.4 6e-11 >seq119621 Length=933 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| || | || | ||| Sbjct 244 AGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCC 185 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || ||| ||||||||| || |||||| ||| | ||||| ||||| Sbjct 184 TCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCC 125 Query 16844 GCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| || || || | | | |||||| | ||| ||| | |||||| || Sbjct 124 TGAATTTTNGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGT 65 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || || || ||||| |||||||| Sbjct 64 TTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 32 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||| ||||| || | || | ||| Sbjct 472 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCC 413 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||||||| ||| |||| | || ||| ||||| || | ||||| ||||| Sbjct 412 TCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 353 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | |||||| | ||| ||||| || || ||| Sbjct 352 TGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 293 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| ||||| ||||| || ||||| Sbjct 292 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| || | || | ||| Sbjct 607 AGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCC 666 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || ||| ||||||||| || |||||| ||| | ||||| ||||| Sbjct 667 TCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCC 726 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| || || | | | |||||| | ||| ||| | |||||| | Sbjct 727 TGAATTTTGGCT--TTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCG 784 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 785 TTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||| ||||| || | || | ||| Sbjct 379 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCC 438 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||||||| ||| |||| | || ||| ||||| || | ||||| ||||| Sbjct 439 TCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 498 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | |||||| | ||| ||||| || || ||| Sbjct 499 TGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTT 558 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| ||||| ||||| || ||||| Sbjct 559 TTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 >seq7293 Length=4729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || |||| || || || |||||||| || |||||||||||||| Sbjct 4703 CCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCA 4644 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || |||| | || ||| |||||| || Sbjct 4643 AGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGA 4584 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | ||| || | | | | |||||| ||| Sbjct 4583 ATTCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACC 4524 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || |||||||| || || || || |||||||| Sbjct 4523 TCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 >seq95098 Length=1037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || ||||| || || | |||||| ||||||||||| ||||||||||| ||||| Sbjct 618 CCCTCCACGAAGCCTAAGGACGAGATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGC 677 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 || || | | || || | ||| ||||| ||| |||| | || || |||||| Sbjct 678 CAGAGTGCGGCCATCGTCTAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCC 732 >seq67990 Length=6038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||| || |||| || ||||| ||||||||||| |||||||| || || Sbjct 4578 CCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTGCA 4519 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| |||| | | ||| || ||| ||| Sbjct 4518 AGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 4459 Query 16829 ACGCCCTCTTTGTC 16842 | ||||| ||||| Sbjct 4458 ATACCCTCCTTGTC 4445 >seq55405 Length=4719 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| || ||||||||||| || ||||| || |||| || | ||| Sbjct 2295 AGGACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCC 2354 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| || || ||| | || | || ||| || || || | || || ||||| Sbjct 2355 TCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCC 2414 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | |||||||| ||| |||| |||||| ||| Sbjct 2415 TGAATTTTAGCCTTCACATTATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTT 2474 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||| || || ||||||||||||||| Sbjct 2475 TTTCCAGTCAAGGTCTTAACAAAAATCTGCATT 2507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404465235684580