Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq94390 131 1e-25 seq55405 109 4e-19 seq9706 109 4e-19 seq35333 98.7 7e-16 seq4456 98.7 7e-16 seq94380 96.9 2e-15 seq122756 93.3 3e-14 seq106596 93.3 3e-14 seq7711 93.3 3e-14 seq7293 93.3 3e-14 seq35332 82.4 5e-11 >seq94390 Length=6339 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1830 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1771 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1770 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1736 >seq55405 Length=4719 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | || | ||| | ||| ||||||||| ||||||||||||| Sbjct 2279 ACCACCACGCAGGCGAAGGACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGC 2338 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| || | || || | ||| || || ||||| || | | || ||||| | || Sbjct 2339 CAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGG 2398 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| |||||| ||||||||| | ||||| || || ||||| Sbjct 2399 AATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATTATCAACAGTGTCCGAACCCTCAAC 2458 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || |||||||| || |||||||| || || || |||||||| Sbjct 2459 CTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAAATCTGCAT 2506 >seq9706 Length=10732 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| |||||||||||||| | |||| ||| |||| || | || || |||||||| Sbjct 1022 CTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 1081 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || || || | |||| || || ||||| ||| || ||||||||| Sbjct 1082 GATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 1141 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || ||||| ||||| || || ||||| | ||||||||| Sbjct 1142 GTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTTTTCAC 1201 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 1202 GAAGATCTGCATCTT 1216 >seq35333 Length=5286 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||||| |||| |||||||| ||||| ||||| |||||||| | Sbjct 422 TACCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTG 363 Query 38149 ACAAAACACGTTCG-TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | | || || | ||||| || || || || || || || ||||| | Sbjct 362 -CAAGGGTCCTGCCATCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGT 304 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| || ||| ||||| ||| ||||| | | || || ||| || Sbjct 303 GGGATTCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCGGAACTCTCC 244 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || ||||||||||| | ||||| ||||| ||||||||| Sbjct 243 ACCTCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCATG 193 >seq4456 Length=3005 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| || ||||| |||||||||||||| | || | ||| |||| || | ||| Sbjct 2886 ATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTG 2827 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 |||||||| || || | ||| || ||||| | || | || |||||||| || || Sbjct 2826 CTTTCCGGCGAAGATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTT 2767 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || ||||| ||| || ||||| | || || || || || || Sbjct 2766 GGCCTTGACGTTGTCGATCGTATCGGAACTCTCGACTTCAAGAGTTATGGTCTTGCCGGT 2707 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||||||| |||||||| || Sbjct 2706 TAGGGTTTTCACGAAGATCTGCATATT 2680 >seq94380 Length=2920 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 824 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 883 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 884 GCCCGTATTTAGCCTT 899 >seq122756 Length=870 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 864 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 805 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 804 GCCCGTATTTAGCCTT 789 >seq106596 Length=1072 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 926 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 985 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 986 GCCCGTATTTAGCCTT 1001 >seq7711 Length=5731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| |||||||||| |||||||| ||||| |||||||||||||| | Sbjct 527 TACCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCG 468 Query 38149 ACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | | | || || | || ||||| ||||| || | || || ||||| | Sbjct 467 -CAAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGT 409 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| ||| || || || || | | ||||| || || Sbjct 408 GGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTCTCC 349 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| ||||| || |||| ||| || || || |||||||| Sbjct 348 ACCTCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq7293 Length=4729 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | || ||||| |||||| || || |||||||| | Sbjct 4477 TACCACCACGGAGACGGAGAACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAATCGG 4418 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | || |||||||| || || | ||||| || || | || Sbjct 4417 CCAAAGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGGG 4358 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| || ||| || || | || ||||| || || | Sbjct 4357 GAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGA 4298 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || ||||| ||||||||||| |||||||| Sbjct 4297 CCTCGAGAGTGATTGTCTTGCCGGTCAAAGTTTTCACGAAGATCTGCAT 4249 >seq35332 Length=499 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||| | ||| || ||| ||||| || ||||||||||| | ||| ||| | || || Sbjct 227 CACAAGATGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCTTC 168 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||||| ||||| ||||| || | | ||| ||||| | || | || || |||||| Sbjct 167 CAATTGCTTTCCTGCAAAGATCAATCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTG 108 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| || || | | || || ||| |||||||| | || || || || Sbjct 107 GATCTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCAACTTCGAGAGTGATGGTCTT 48 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | |||||| ||||| |||||||| || Sbjct 47 GCCGGTTAGGGTTTTGACGAAGATCTGCATATT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334432267038002