Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq90076 194 2e-44 seq51752 150 2e-31 seq47021 102 1e-16 seq47681 89.7 7e-13 >seq90076 Length=2428 Score = 194 bits (214), Expect = 2e-44 Identities = 396/583 (68%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 32775 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 32832 |||| |||||||| || || |||||||| |||| ||| | || | ||| || || Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 1836 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 1835 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 1779 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 1778 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 1719 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 ||||||| || |||||||| || || || || || || || |||||| | ||||||| Sbjct 1718 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 1659 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || |||||| | || | | || | |||||| || || ||||| || Sbjct 1658 CGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGG 1599 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | || || || || | || || | || || | ||| ||||| | || || | | || Sbjct 1598 CGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCC 1539 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | | || ||| | || | || ||||| ||| | |||||||| |||||||| || | Sbjct 1538 AGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTT 1479 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || ||||| | |||||| | | || ||||| ||||| || Sbjct 1478 TCTTGTACATCTCCCAGATTTGCGGGTACTGAATCGGAAACAT 1436 >seq51752 Length=12828 Score = 150 bits (166), Expect = 2e-31 Identities = 261/374 (70%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| ||||||||||||||||| || |||||||||| ||||| ||||| || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 32775 | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGT 32832 |||| |||||||| || || |||||||| |||| ||| | || | ||| || || Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGT 328 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| | | ||||| | |||||| || || || |||| || || || | Sbjct 327 C---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGG 271 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||||| | ||| ||||| | ||||| | || || || | | ||| | Sbjct 270 CGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGT 211 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 ||||||| || |||||||| || || || || || || || |||||| | ||||||| Sbjct 210 ACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGG 151 Query 33013 TAATCTGTACTTCT 33026 | || |||||| Sbjct 150 CGACTTGGACTTCT 137 >seq47021 Length=9578 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || || | |||| | |||| || ||| || | ||| ||| Sbjct 3276 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCCA 3335 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||||| |||||| | ||||| |||||| |||||| Sbjct 3336 TTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGAG 3395 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || || ||| ||| | || || || || ||||||||||| Sbjct 3396 ACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 3455 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || |||||||| || ||||| Sbjct 3456 CCTTCGATACTATCTTCTTTCATG 3479 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| || || || | || ||||| || || || |||||| ||| || | | || Sbjct 3609 AGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTGGGACATCATATG 3668 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | |||||| || || ||||| | ||| |||||||| | || || | ||| | Sbjct 3669 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGCAACCCTCATCA 3727 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||||||||| ||||| || | ||| | | || || | ||| || | || | Sbjct 3728 ACATGTGCTGAGGCCTTTCCACAACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 3787 Query 63645 AAGTTTTAAAACCAAAATA 63663 |||||||| ||||| || Sbjct 3788 GGGTTTTAAAGCCAAAGTA 3806 >seq47681 Length=10123 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | || | ||| |||| ||| | || | || |||||||| ||| ||| Sbjct 5060 CCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCCA 5119 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 ||||| || ||||| || || ||||| || || | |||||||| || || ||| Sbjct 5120 TTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGAG 5179 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || ||| || || |||||||| || Sbjct 5180 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATATT 5239 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 5240 CCTTCAATACTATCATCTTTCATG 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632632904903200