Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq90076 176 5e-39 seq51752 125 8e-24 seq13125 95.1 1e-14 seq73806 87.8 2e-12 seq106236 86.0 7e-12 seq88332 86.0 7e-12 seq53833 86.0 7e-12 seq46006 86.0 7e-12 seq8831 86.0 7e-12 seq98125 84.2 2e-11 seq32565 84.2 2e-11 seq16916 84.2 2e-11 >seq90076 Length=2428 Score = 176 bits (194), Expect = 5e-39 Identities = 499/754 (66%), Gaps = 16/754 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || |||||||| ||||| |||||| |||||| | | ||||| || | | ||| Sbjct 2179 CTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCA-ACGC 2121 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||| || || |||||| || || || |||| || | || || || |||| || | Sbjct 2120 ACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCCTTCACTATCGC 2061 Query 93043 -TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT--GTACATTAAGCACGCAAA 93099 | | || | || | | || | || || | ||||| ||| | ||||| || || Sbjct 2060 CTTTNACGCG-CTCCTCGCTGATCTTCGT-CTTCATAAGGCCGTAGAGCAAGCATGCGAA 2003 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 ||| || | || |||||||| || || ||||| || ||| ||||| || || | Sbjct 2002 ATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCAT 1943 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACCTT 93218 | ||| || || || ||||||||||||| |||||| || || || || ||||| |||| Sbjct 1942 TAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAAGAATATTCCTT 1884 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 ||||| || || || | | || || || || | |||| | | |||||| | Sbjct 1883 CCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAG---CCGTCGATCCAAT 1827 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | ||||| | ||| ||||| | || || | |||||||| ||| || |||| Sbjct 1826 CGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGT 1767 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | || || || ||| ||||| || |||| | || || |||||||| || | Sbjct 1766 GGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGAGT 1707 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | ||||| ||||| || ||||| || ||||| | || || | || || |||| Sbjct 1706 GAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGACTT 1647 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 ||| || || | |||||||||| || || || ||||| || || || || | Sbjct 1646 CTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGG 1587 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGATAG 93576 | | | || | || || |||||||| ||| |||| | ||||| | |||| | Sbjct 1586 CGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTGACGGA--G 1529 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| | || | |||||||| || | |||||||||||||| || ||||| |||||||| Sbjct 1528 ATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTCTTGTACAT 1469 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 ||||| || | | || ||||| ||||| ||| Sbjct 1468 CTCCCAGATTTGCGGGTACTGAATCGGAAACATG 1435 >seq51752 Length=12828 Score = 125 bits (138), Expect = 8e-24 Identities = 412/631 (65%), Gaps = 11/631 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || |||||||| ||||| |||||| |||||| | | ||||| || | | ||| Sbjct 670 CTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAACCA-ACGC 612 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||| || || |||||| || || || |||| || | || || || |||| || | Sbjct 611 ACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCCTTCACTATCGC 552 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT--GTACATTAAGCACGCAAAG 93100 |||| | || | | || | || || | ||||| ||| | ||||| || || Sbjct 551 CTTTACGCG-CTCCTCGCTGATCTTCGT-CTTCATAAGGCCGTAGAGCAAGCATGCGAAA 494 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| || | || |||||||| || || ||||| || ||| ||||| || || | Sbjct 493 TCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATT 434 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACCTTC 93219 | ||| || || || ||||||||||||| |||||| || || || || ||||| ||||| Sbjct 433 AATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAAGAATATTCCTTC 375 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 |||| || || || | | || || || || | |||| | | |||||| | Sbjct 374 CACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGA---GCCGTCGATCCAATC 318 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| | ||| ||||| | || || | |||||||| ||| || |||| Sbjct 317 GAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTG 258 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 | || || || ||| ||||| || |||| | || || |||||||| || || Sbjct 257 GTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGAGTG 198 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 | ||||| ||||| || ||||| || ||||| | || || | || || ||||| Sbjct 197 AATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGACTTC 138 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || || || | |||||||||| || || || ||||| || || || || || Sbjct 137 TTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGC 78 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCA 93550 | | || | || || |||||||| ||| Sbjct 77 GAGGACGTGAGTAATGAAGTGTTTCTCGTCA 47 >seq13125 Length=5704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 1321 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGATAGAGAGCG 1262 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 1261 TGGGTTCAAATCCCACTTCTGACAAA 1236 >seq73806 Length=13208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 11994 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 11937 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 11936 GCGTGGGTTCAAATCCCACTTCTGACAA 11909 >seq106236 Length=934 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 436 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 379 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATT 126357 ||| || |||||| ||| ||||| | ||||| Sbjct 378 TTCAAATCCCACAGCTGTCAAATATGTTATT 348 >seq88332 Length=2335 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 945 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 886 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||| || ||||| || |||| Sbjct 885 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTCAAAATTTT 842 >seq53833 Length=4934 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3559 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3502 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTT 126364 ||| || |||||| ||| ||| | | ||||| ||||| Sbjct 3501 TTCAAATCCCACAGCTGTCAATTATTTTATTTCAATTT 3464 >seq46006 Length=2754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 2224 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 2165 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||| || ||||| || |||| Sbjct 2164 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTCAAAATTTT 2121 >seq8831 Length=3858 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGA-- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 991 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAATGAAG 1048 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||||||| || Sbjct 1049 GCGTGGGTTCAAATCCCACTTCTGACAAATTTTT 1082 >seq98125 Length=2665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1272 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 1329 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1330 GCGTGGGTTCAAATCCCACTTCTGACAA 1357 >seq32565 Length=3215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 2781 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 2724 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 2723 GCGTGGGTTCAAATCCCACTTCTGACAATTT 2693 >seq16916 Length=579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 140 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 197 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 198 GCGTGGGTTCAAATCCCACTTCTGACAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555982755812080