Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq83303 152 1e-31 seq31193 95.1 2e-14 seq105043 93.3 9e-14 seq92869 93.3 9e-14 seq91220 93.3 9e-14 seq79872 93.3 9e-14 seq76533 93.3 9e-14 seq63718 93.3 9e-14 seq59745 93.3 9e-14 seq52485 93.3 9e-14 seq27006 93.3 9e-14 seq8966 93.3 9e-14 seq39573 91.5 3e-13 >seq83303 Length=13250 Score = 152 bits (168), Expect = 1e-31 Identities = 297/437 (68%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||| | |||||||||| || | || ||| | ||| | | | || ||||| Sbjct 5140 TGACTTCGTTAACAAGGAGCTTATATTGTTTTCGATGGCGGATCTCCAAAGGTCAATTCC 5199 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 |||| |||||||| ||||| || | |||||||| || | | |||||| | Sbjct 5200 ATCAATGGTTGATGGCCTGAAGCCGGGTCAAAGGAAGATCCTTTTCTGCTCTTTCAAGAG 5259 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || | | ||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 5260 AAATTTTATCAAAGAAGCAAAAGTTGCTCAGTTTTCTGGCTATGTTTCCGAGCATTCTGC 5319 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| |||||||| ||||| || |||| |||| ||||||||||| | ||| Sbjct 5320 TTACCATCATGGTGAGCAAAGTCTTGCCAGTACCATCATAGGTATGGCACAGGATTTTGT 5379 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGG 218816 |||||| |||||||| ||||| || | || || || || |||||| | ||| ||| Sbjct 5380 GGGCAGCAACAACATTAACTTTCTTCAACCTAATGGCCAATTTGGTACACGTAACCAGGG 5439 Query 218817 TGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCA 218876 || || ||| ||| |||||| || || | ||| | |||| || | || || | Sbjct 5440 AGGCAAAGATGCTGCAAGTGCCAGATACATATATACTCGGCTGTCTCCTATTACACGGTA 5499 Query 218877 GGTGTT--CAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCG 218934 |||| ||| ||| ||||| ||| ||| | ||| | | || ||||| ||| Sbjct 5500 TCTGTTTCCAA--AGGATGATGACAAGCTTCTTGACTATTTAAATGAGGATGGGCAATCG 5557 Query 218935 ATTGAGCCCGAGTGGTA 218951 ||||| ||| ||||| Sbjct 5558 ATTGAACCCACTTGGTA 5574 >seq31193 Length=9051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 843 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 902 Query 142562 GCCCCAC 142568 ||||||| Sbjct 903 GCCCCAC 909 >seq105043 Length=3862 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3197 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3138 Query 142563 CCCCAC 142568 |||||| Sbjct 3137 CCCCAC 3132 >seq92869 Length=3378 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 3323 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3264 Query 142563 CCCCAC 142568 |||||| Sbjct 3263 CCCCAC 3258 >seq91220 Length=1553 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 101 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 160 Query 142563 CCCCAC 142568 |||||| Sbjct 161 CCCCAC 166 >seq79872 Length=12001 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1430 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1371 Query 142563 CCCCAC 142568 |||||| Sbjct 1370 CCCCAC 1365 >seq76533 Length=7650 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7067 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7126 Query 142563 CCCCAC 142568 |||||| Sbjct 7127 CCCCAC 7132 >seq63718 Length=10487 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5336 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5395 Query 142563 CCCCAC 142568 |||||| Sbjct 5396 CCCCAC 5401 >seq59745 Length=5471 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5235 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5294 Query 142563 CCCCAC 142568 |||||| Sbjct 5295 CCCCAC 5300 >seq52485 Length=8792 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 8585 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8644 Query 142563 CCCCAC 142568 |||||| Sbjct 8645 CCCCAC 8650 >seq27006 Length=3893 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 481 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 422 Query 142563 CCCCAC 142568 |||||| Sbjct 421 CCCCAC 416 >seq8966 Length=10789 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 10479 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 10538 Query 142562 GCCCCA 142567 |||||| Sbjct 10539 GCCCCA 10544 >seq39573 Length=2772 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 2166 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 2107 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 2106 AGCCCCAC 2099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026175615945422