Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq55405 89.7 4e-13 seq95098 84.2 2e-11 >seq55405 Length=4719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || ||||| || || ||||| || | Sbjct 3190 ATGCAGATCTTTGTGAAAACCCTTACTGGAAAAACTATCACTTTGGAAGTTGAGAGTTCT 3131 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| |||||| | || | |||| Sbjct 3130 GACACTATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 3071 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || || |||||| ||| | || |||||||| Sbjct 3070 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACTCTTGCTGATTACAAC 3011 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| | || | ||||| || Sbjct 3010 ATCCAGAAGGAATCAACACTTCACTTGGTGCTTCGCCTTCGAGGTGG 2964 >seq95098 Length=1037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTA-TTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||||| ||| |||| || | || || || || || ||| ||||| ||| | | Sbjct 617 ATGCAAATTTTTNGTTAAGACCCTCACTGGTAAGACAATCACCTTGGAAGTTGAAAGCTC 558 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||| | | | || | ||| ||||| ||||| || || | ||||| | Sbjct 557 TGACACGATCGACAATGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCTG---A 501 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || ||| | || ||||||||||| ||||| || || ||| | || | || ||||| Sbjct 500 TCAGCAGCGTCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCCTTGCAGATTA 441 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| || ||||||||||||||||| || |||| | ||||| | |||||| Sbjct 440 CAACATACAGAAGGAATCTACTCTCCACCTGGTCCTGCGTTTGAGGGGAGGA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357574234824268