Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq90076 159 7e-34 seq51752 159 7e-34 >seq90076 Length=2428 Score = 159 bits (176), Expect = 7e-34 Identities = 295/432 (68%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || || || ||| ||||||||||| Sbjct 1583 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAAAATCTCGCCGCCAGGTTCATG 1642 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || | ||||| ||| |||||| ||||||||||| || || |||||| Sbjct 1643 AAAGAAGTCCAAGTCGCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCAATCGAGAAC 1702 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || ||||| || || ||| | || |||||| || ||| || Sbjct 1703 ATTCACTCCGAAATGTACTCCCTTCTCCTCGAAACCTACATCAAAGACTCCGAAGAAAAG 1762 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 ||| || ||| ||||| || ||| |||| ||| || || ||||| | ||||| Sbjct 1763 AACCACCTCTTCCGCGCCATCGAAACGGTGCCGTGCGTCGCCAAAAAGGCCAAGTGGGCC 1822 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||| | |||||||| | |||| || |||| ||| | || | ||||| | | Sbjct 1823 CTCGATTGGATCGACGGCTCCGA---GACATTCGCGGAGCGACTAATTGCCTTCGCTTGC 1879 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || || ||||||||||| ||| | | || || ||||| || || | Sbjct 1880 GTGGAAGGAATATTCTTCTCGGGAAGCTTTTGCGCAATATTTTGGCTAAAAAAGCGCGGA 1939 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | ||||| ||| | |||||||| ||||| | ||| | |||||||| || || | Sbjct 1940 TTAATGCCGGGATTAACCTTCTCAAACGAGTTAATCTCGCGAGACGAGGGACTTCACTGC 1999 Query 42843 GACTTTGCCTGC 42854 || || || ||| Sbjct 2000 GATTTCGCATGC 2011 >seq51752 Length=12828 Score = 159 bits (176), Expect = 7e-34 Identities = 295/432 (68%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || || || ||| ||||||||||| Sbjct 75 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAAAATCTCGCCGCCAGGTTCATG 134 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || | ||||| ||| |||||| ||||||||||| || || |||||| Sbjct 135 AAAGAAGTCCAAGTCGCCGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCAATCGAGAAC 194 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || ||||| || || ||| | || |||||| || ||| || Sbjct 195 ATTCACTCCGAAATGTACTCCCTTCTCCTCGAAACCTACATCAAAGACTCCGAAGAAAAG 254 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 ||| || ||| ||||| || ||| |||| ||| || || ||||| | ||||| Sbjct 255 AACCACCTCTTCCGCGCCATCGAAACGGTGCCGTGCGTCGCCAAAAAGGCCAAGTGGGCC 314 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||| | |||||||| | |||| || |||| ||| | || | ||||| | | Sbjct 315 CTCGATTGGATCGACGGCTCCGA---GACATTCGCGGAGCGACTAATTGCCTTCGCTTGC 371 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || || ||||||||||| ||| | | || || ||||| || || | Sbjct 372 GTGGAAGGAATATTCTTCTCGGGAAGCTTTTGCGCAATATTTTGGCTAAAAAAGCGCGGA 431 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | ||||| ||| | |||||||| ||||| | ||| | |||||||| || || | Sbjct 432 TTAATGCCGGGATTAACCTTCTCAAACGAGTTAATCTCGCGAGACGAGGGACTTCACTGC 491 Query 42843 GACTTTGCCTGC 42854 || || || ||| Sbjct 492 GATTTCGCATGC 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942850189557920