Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4456 102 6e-17 seq7711 89.7 4e-13 seq67990 86.0 5e-12 seq35333 86.0 5e-12 seq9706 86.0 5e-12 seq95098 84.2 2e-11 seq93401 84.2 2e-11 >seq4456 Length=3005 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || || || |||||||| || ||||||||||| |||||||| || Sbjct 2910 ACCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGC 2851 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| |||| || | |||||| ||||| || |||| ||||||||||||| || Sbjct 2850 CAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCCGGAGG 2791 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||||||||| || || ||| | | | |||| | | ||| Sbjct 2790 AATTCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGAACTCTCGAC 2731 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 ||| | ||||| || || |||||||| |||||||| ||||| ||||| || Sbjct 2730 TTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 2680 >seq7711 Length=5731 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||| ||||| || ||||||||||| |||||||| || Sbjct 526 ACCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGC 467 Query 33960 CAATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| | | || |||| ||||| || ||||| |||| |||||||||||| | Sbjct 466 -AAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTG 408 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGAT-TC 34076 | | | || |||||| | | | || |||| | | ||| | |||||| || | || Sbjct 407 GAATTCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTGTCAATCGTATCAG-AGCTCTC 350 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || || || || || |||||||| ||||| Sbjct 349 CACCTCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq67990 Length=6038 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||| |||||||| |||||| ||||||||||||||||| Sbjct 4578 CCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTGCA 4519 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||||||| || || ||||| |||| | |||||||||| || Sbjct 4518 AGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 4459 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 4458 ATACCCTCCTTGTCC 4444 >seq35333 Length=5286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/239 (69%), Gaps = 22/239 (9%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||||| ||||| ||||| || |||||||||||||||||||||| Sbjct 421 ACCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTG- 363 Query 33960 CAATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||| ||| || | || || | || ||||| || || ||||| |||||||||||| Sbjct 362 CAAGGGTCCTGC-CATCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGT 304 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG 34077 || | | || || ||| ||||| |||| ||| ||||| | | ||| Sbjct 303 GGGATTCCTTCCTTATCCTGGATTTTGGCCTTA---------ACATTATCAATTGTGTCG 253 Query 34078 ---CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| || |||||||| || || |||||||| || ||||| ||||| Sbjct 252 GAACTCTCCACCTCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCAT 194 >seq9706 Length=10732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||| || || || || |||||||||||| |||||||| ||||| || Sbjct 996 AGCCGAAGCACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGT 1055 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||||||||| || || |||||||| ||| || | | ||| Sbjct 1056 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 1115 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 ||||| ||| || ||| || | || | | || | ||| || || | | Sbjct 1116 TTGTCTTGAATCTTCGCCTTCACATTG---TCGATGGTGTCCGAAGACTCCACCTCTAAC 1172 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || || ||||| |||||||| ||||| ||||| || Sbjct 1173 GTAATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1216 >seq95098 Length=1037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| || || ||||| || ||| ||||||||| ||||||||||| ||| Sbjct 619 CCTCCACGAAGCCTAAGGACGAGATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 678 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | || || | ||||| | ||||||||||||||| |||| || ||||| ||| Sbjct 679 AGAGTG-CGGCCATCGTCTAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCC 732 >seq93401 Length=1125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| ||| || ||||| ||||||||||| ||||| || Sbjct 1118 AGCCTGAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGG 1059 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||||||||||| ||||| || ||||| ||||||||||| Sbjct 1058 CCATCTTCCAATTGCTTCCCGGCGAAGATCAGACGCTGCTGATC 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396451973885884