Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq90076 104 3e-17 seq51752 104 3e-17 >seq90076 Length=2428 Score = 104 bits (114), Expect = 3e-17 Identities = 181/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| | || || |||||| | ||| ||||| | || Sbjct 1996 GTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATTAATCC 1937 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || || || ||||| ||||||||||| ||||| ||||| || Sbjct 1936 GCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTCCACGCA 1877 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| |||| || ||||| || || | | || ||| | ||| | | || Sbjct 1876 AGCGAAGGCAATTAGTCGCTCCGCGAATG-TCTCG--GAGCCGTCGATCCAATCGAGGGC 1820 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||||| |||||||| ||| ||||| || || | ||| || ||||| | ||||| Sbjct 1819 CCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTGGTTCTT 1760 Query 126298 TTCTGATGGATCTTTGATGTA 126318 |||| | ||||||||||| Sbjct 1759 TTCTTCGGAGTCTTTGATGTA 1739 >seq51752 Length=12828 Score = 104 bits (114), Expect = 3e-17 Identities = 181/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| | || || |||||| | ||| ||||| | || Sbjct 488 GTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATTAATCC 429 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || || || ||||| ||||||||||| ||||| ||||| || Sbjct 428 GCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTCCACGCA 369 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| |||| || ||||| || || | | || ||| | ||| | | || Sbjct 368 AGCGAAGGCAATTAGTCGCTCCGCGAATG-TCTCG--GAGCCGTCGATCCAATCGAGGGC 312 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||||| |||||||| ||| ||||| || || | ||| || ||||| | ||||| Sbjct 311 CCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTGGTTCTT 252 Query 126298 TTCTGATGGATCTTTGATGTA 126318 |||| | ||||||||||| Sbjct 251 TTCTTCGGAGTCTTTGATGTA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596411707777360