Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9706 118 1e-21 seq119621 113 5e-20 seq61388 113 5e-20 seq7711 111 2e-19 seq55405 105 7e-18 seq93646 96.9 4e-15 seq4456 95.1 1e-14 seq95098 87.8 2e-12 >seq9706 Length=10732 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| |||||||||||||| |||| |||||| |||| || |||||| Sbjct 1011 TGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGC 1070 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || || || ||||| ||||||||||| | ||| | | |||||||| | ||| | || Sbjct 1071 TTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGT-CTTGAATCTT 1129 Query 42126 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | || | | | | ||||| || ||||| || | ||| ||||| || ||||| Sbjct 1130 CGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGT 1189 Query 42185 TAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || || || ||||| ||||| || Sbjct 1190 TAGGGTTTTCACGAAGATCTGCATCTT 1216 >seq119621 Length=933 Score = 113 bits (124), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||| |||| ||| |||||| ||||| ||||| ||||| Sbjct 260 ACCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGC 201 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || |||||||| || || || || | |||||||| | || Sbjct 200 AAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGG 141 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG--TTTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||| |||| | ||||| | | | |||||| |||| Sbjct 140 GATCCCCTCCTTGTCC-TGAATTTTNGGCTTTGACATTATCAATTGTGTCGGAGCTTTCC 82 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 81 ACTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 32 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||||||||| || || || ||||| ||||| || | Sbjct 476 ACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACC 417 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || || ||||| || || | | ||||||||| | ||| | | |||||| Sbjct 416 ATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTT 357 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| |||| ||| | || | ||||| |||||| || | || | Sbjct 356 GTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTA 298 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || || ||||||||||||||||| Sbjct 297 TTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||||| ||| |||||| || || ||||||||||| ||||||| | Sbjct 932 ACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCC 873 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| |||||||| || | || ||||||||| | ||| | | |||||| Sbjct 872 ATCCTCAAGTTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGAATCCCCTCCTT 813 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| || || ||| | | | | ||||| ||| ||||| || | || Sbjct 812 ATCCTGTATCTTGGCTTTCACATTGTCAATTGTGTCAGAACTC---TCCACCTCCAAGGT 756 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || || || ||||| ||||| || ||||| Sbjct 755 GATGGTTTTTCCTGTAAGAGTCTTCACAAAAATCTGCAT 717 >seq61388 Length=1455 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||| |||| ||| |||||| ||||| ||||| ||||| Sbjct 591 ACCACCCCTGAGACGAAGGACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGC 650 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || |||||||| || || || || | |||||||| | || Sbjct 651 AAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGG 710 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| |||| | ||||| | | | |||||| ||||| Sbjct 711 GATCCCCTCCTTGTCC-TGAATTTTGGCTTTGACATTATCAATTGTGTCGGAGCTTTCCA 769 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 770 CTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 818 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||||||||| || || || ||||| ||||| || | Sbjct 375 ACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACC 434 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || || ||||| || || | | ||||||||| | ||| | | |||||| Sbjct 435 ATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTT 494 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||| |||| ||| | || | ||||| |||||| || | || | Sbjct 495 GTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTA 553 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || || ||||||||||||||||| Sbjct 554 TTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 >seq7711 Length=5731 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | |||||||||| || | || ||||| |||||||||||||| || Sbjct 526 ACCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGC 467 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| | | || || |||||||| ||||| || || | |||||||| || | ||| Sbjct 466 AAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGG 407 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| | || | || | ||| | | | ||| || |||| | Sbjct 406 AATTCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTC---T 351 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 350 CCACCTCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq55405 Length=4719 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| ||||| || | ||| |||||| || || || || ||||| Sbjct 3191 ACCACCCCTGAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 3250 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| | || || || ||||||||||| || || || | ||||||||| | ||| Sbjct 3251 AAGTGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGG 3310 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| ||| ||||||| ||||| | | | |||||| ||| || Sbjct 3311 GATCCCTTCCTTATCCTGGATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCAAC 3370 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || || || || || || |||||||||||||| Sbjct 3371 CTCAAGGGTTATGGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| || ||||||||| |||||||||||||||| ||| ||| | || || || || Sbjct 2303 ATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTG 2362 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||||||| || || | | |||||| || | ||| | | ||||||||| ||| ||| Sbjct 2363 CTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCC-TGAATTT 2421 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGC 42180 | | || | | | || ||||| ||| || || || | ||||| ||||| | Sbjct 2422 TAGCCTTCACATTATCAACAGTGTC---CGAACCCTCAACCTCCAGGGTGATAGTTTTTC 2478 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | ||||| ||||| || |||||| Sbjct 2479 CAGTCAAGGTCTTAACAAAAATCTGCATT 2507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | || | |||||| || | ||| ||||| || || ||||||||||| Sbjct 2963 ACCACCTCGAAGGCGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGC 3022 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| ||||| || || |||| ||||||||| | ||| Sbjct 3023 AAGAGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGG 3082 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | |||||| ||| ||| |||| | |||| | | | ||||| ||| | Sbjct 3083 GATACCCTCCTTATCC-TGAATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTC---T 3138 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 3139 CAACTTCCAAAGTGATAGTTTTTCCAGTAAGGGTTTTCACAAAGATCTGCAT 3190 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | || | |||||| || | ||| |||||| || |||||||| ||||| Sbjct 2735 ACCTCCACGAAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGC 2794 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | || || |||||||||||||| || ||||| | |||||| || | || Sbjct 2795 AAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGAGG 2854 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || |||||||| ||| ||| ||| | | | | || || ||| || Sbjct 2855 GATGCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCAATGGTATCTGAACTC---TC 2911 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || || || || || ||||| |||||||||||||| Sbjct 2912 AACTTCCAAGGTAATAGTCTTCCCAGTAAGAGTCTTGACAAAGATTTGCAT 2962 >seq93646 Length=475 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/232 (69%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | || | |||||| || | ||| ||||| || || ||||||||||| Sbjct 439 ACCACCTCGAAGGCGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGC 380 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| ||||| || || || | ||||||||| | ||| Sbjct 379 AAGAGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATNAGNCTCTGCTGGTCNGGTGG 320 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||| ||| || || ||| | | | | ||||| ||| ||| Sbjct 319 GANNCCNTCCTTNTCCTGNATNTTGGCTTTTACATTATCAATGGTGTCAGAGCT---TTC 263 Query 42158 CACATCGACCGTGATGGTTTTGCCC-GTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| ||| || || || ||||| |||||||||||||| Sbjct 262 AACCTCAAGGGTAATGGTCTTGNCCGGTAAGAGTCTTCACAAAGATTTGCAT 211 >seq4456 Length=3005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| |||||||| ||| |||| || || ||||| || ||||| Sbjct 2873 TCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAAG 2814 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||| || | || | | ||| ||||| ||| || |||| ||| Sbjct 2813 ATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTT 2755 Query 42138 G-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||| ||| ||| || || || | || ||||| ||||| ||||| || || Sbjct 2754 GTCGATCGTATCGGAACTC---TCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTT 2698 Query 42194 TACAAAGATTTGCATTTT 42211 || ||||| ||||| || Sbjct 2697 CACGAAGATCTGCATATT 2680 >seq95098 Length=1037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCG-A 42075 ||| || ||||||||||||||||| ||||||| |||| || ||||| || ||||| | Sbjct 195 CTCTTTCTGAATATTGTAATCAGCGAGAGTCCTACCGTCCTCCAGCTGTTTCCCAGCNAA 254 Query 42076 ATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 | || || | ||| || || | ||| | | |||||||||| ||| || ||| | Sbjct 255 AAATAAGCCTCTGTTGATCTGGTGGGATCCCCTCCTTGTCCTGGATCTTAGCTTTCACAT 314 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACAT-CGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | |||||| |||| ||||| | | | || || || || || |||| ||| Sbjct 315 TATCGATCGTGTCAGAGCTC---TCCACCTCCNAAAGTTATCGTCTTCCCAGTTAATGTC 371 Query 42192 TTTACAAAGATTTGCATT 42209 || |||||||| |||||| Sbjct 372 TTCACAAAGATCTGCATT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542356275637280