Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16]
126,142 sequences; 261,457,759 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq9706 114 1e-20
seq119621 105 7e-18
seq61388 105 7e-18
seq87541 96.9 3e-15
seq95098 87.8 2e-12
seq55405 87.8 2e-12
seq35333 87.8 2e-12
seq7293 84.2 2e-11
>seq9706
Length=10732
Score = 114 bits (126), Expect = 1e-20
Identities = 145/196 (74%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||| ||||| ||| || ||| || ||||||||| || || |||| |
Sbjct 1020 GACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCA 1079
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||| |||||||| || || || || ||||| ||| | || | || |
Sbjct 1080 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT-TGAATCTTCGCCTTCAC 1138
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| | | |||||| | ||||||||||| | ||| | || || || || || ||||
Sbjct 1139 ATTGT-CGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTTT 1197
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 1198 TCACGAAGATCTGCAT 1213
>seq119621
Length=933
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || || || | | ||||||||||||| ||||| |||||
Sbjct 488 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 429
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| ||||| |||||||| || | | | || | | ||| ||||| || ||
Sbjct 428 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 369
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| |||||| || | | || | |||||||| |||||
Sbjct 368 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCAC 309
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | |||||||||||||| ||||||||||| || |||||
Sbjct 308 TTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/196 (71%), Gaps = 3/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||||||||| | || || ||||| ||||| ||||| | |
Sbjct 226 GACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCA 167
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538
| || || | || ||||||||||| || || || ||||| ||| |||| | ||| |
Sbjct 166 AAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTC-CTGAATTTTNGGCTTTGA 108
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | ||||||| ||||| || | || | |||||| ||||| || || |
Sbjct 107 CATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCT 48
Query 138599 TTACAAAAATCTGCAT 138614
||||||| ||||||||
Sbjct 47 TTACAAAGATCTGCAT 32
>seq61388
Length=1455
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || || || | | ||||||||||||| ||||| |||||
Sbjct 363 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 422
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| ||||| |||||||| || | | | || | | ||| ||||| || ||
Sbjct 423 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 482
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| |||||| || | | || | |||||||| |||||
Sbjct 483 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCAC 542
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | |||||||||||||| ||||||||||| || |||||
Sbjct 543 TTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590
Score = 95.1 bits (104), Expect = 1e-14
Identities = 143/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || ||||| ||||| | ||||| ||||| |||||||| || |
Sbjct 851 TTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGTTTGCCAG 910
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537
| |||| | | || ||||| || || || ||||| ||||| ||| |||||| |||
Sbjct 911 CAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATTTTTGCCTTT 969
Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| ||||| | | |||||||| |||||||| | || | || || ||||| || ||
Sbjct 970 ACATTGT-CGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTTCCAGTGAGGGT 1028
Query 138597 TTTTACAAAAATCTGCAT 138614
||||||||| || |||||
Sbjct 1029 TTTTACAAAGATTTGCAT 1046
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||||||||| | || || ||||| ||||| ||||| | |
Sbjct 625 GACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCA 684
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
| || || | || ||||||||||| || || || ||||| ||| |||| | ||| |
Sbjct 685 AAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTC-CTGAATTTTGGCTTTGAC 743
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||||| ||||| || | || | |||||| ||||| || || ||
Sbjct 744 ATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTT 803
Query 138600 TACAAAAATCTGCAT 138614
|||||| ||||||||
Sbjct 804 TACAAAGATCTGCAT 818
>seq87541
Length=1860
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|||| || | | |||||||||| || |||||||||||| | || | |||||||
Sbjct 6 ACTAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCG 65
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
|| || || || | |||| |||||||||||||||||||| || ||||| ||||| |
Sbjct 66 AGCTGCTTCCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGG 125
Query 138526 AT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584
|| || | || |||| || | ||| || | ||||| ||||| | || | || ||
Sbjct 126 ATCTTGGTCTTGACATTG-TCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTT 184
Query 138585 ACCAGTCAGAG--TTTTTACAAAAATCTGCATGG 138616
|| || || | |||| || || ||||||||||
Sbjct 185 CCCCGTTAGGGNNTTTTCACGAAGATCTGCATGG 218
>seq95098
Length=1037
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||| ||||||||||||||||| || || |||||| || ||||||||||| ||||
Sbjct 879 TTGATTCCTTTTGAATGTTGTAATCCGCCAAAGTACGGCCATCTTCGAGTTGTTTTCCGG 938
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
| |||| || | ||||| |||||||| || ||||| |||||
Sbjct 939 CAAAGATCAGCCTTTGTTGATCCGGAGGAATCCCTTCCTTGTC 981
>seq55405
Length=4719
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| || ||||| || || ||| ||| ||||| ||||| ||||| | |
Sbjct 2313 GACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCA 2372
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| | | ||| || || || || || ||||| ||||| ||| |||| | || |
Sbjct 2373 AAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTC-CTGAATTTTAGCCTTCAC 2431
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || || ||||| | ||| ||||| | || | ||||| ||||||| || ||
Sbjct 2432 ATTATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTT 2491
Query 138600 TACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 2492 AACAAAAATCTGCAT 2506
>seq35333
Length=5286
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || | |||||||| ||| | || | | || ||||| ||||||||||| ||
Sbjct 420 CCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTGCA 361
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | ||||| || ||||| || | |||| |||||||| || ||||| ||
Sbjct 360 AGGGTCCTGCCA-TCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGTGG 302
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || |||||| || | | || | ||||||| ||||||
Sbjct 301 GATTCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCGGAACTCTCCAC 242
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
||| | || | |||||||| || || ||||| || || ||||||||| ||
Sbjct 241 CTCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCATGCCT 190
>seq7293
Length=4729
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464
||| || || | | |||||||||| ||||||||||||||| | ||||| || ||
Sbjct 4686 AACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCTTC 4627
Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524
| || || |||| | || | | ||| |||||||| || || ||||| ||||| |
Sbjct 4626 CAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGAATTCCTTCCTTGTC-CT 4568
Query 138525 GATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582
|| | || | |||| ||| || | |||||||| ||| ||||| | || | ||
Sbjct 4567 GAATCTTAGCCTTAACGTTG-TCAATGGTGTCGGAACTCTCAACCTCAAGAGTGATGGTC 4509
Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || |||||||| || || || ||||||||
Sbjct 4508 TTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495479905854240
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