Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9706 114 1e-20 seq119621 105 7e-18 seq61388 105 7e-18 seq87541 96.9 3e-15 seq95098 87.8 2e-12 seq55405 87.8 2e-12 seq35333 87.8 2e-12 seq7293 84.2 2e-11 >seq9706 Length=10732 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||| ||| || ||| || ||||||||| || || |||| | Sbjct 1020 GACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTCGAGCTGCTTGCCGGCA 1079 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 1080 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT-TGAATCTTCGCCTTCAC 1138 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | ||||||||||| | ||| | || || || || || |||| Sbjct 1139 ATTGT-CGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTTT 1197 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 1198 TCACGAAGATCTGCAT 1213 >seq119621 Length=933 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | ||||||||||||| ||||| ||||| Sbjct 488 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 429 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| |||||||| || | | | || | | ||| ||||| || || Sbjct 428 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 369 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| || | | || | |||||||| ||||| Sbjct 368 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCAC 309 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||||||||| || ||||| Sbjct 308 TTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || ||||| ||||| ||||| | | Sbjct 226 GACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCA 167 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || || | || ||||||||||| || || || ||||| ||| |||| | ||| | Sbjct 166 AAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTC-CTGAATTTTNGGCTTTGA 108 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| ||||| || | || | |||||| ||||| || || | Sbjct 107 CATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCT 48 Query 138599 TTACAAAAATCTGCAT 138614 ||||||| |||||||| Sbjct 47 TTACAAAGATCTGCAT 32 >seq61388 Length=1455 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | ||||||||||||| ||||| ||||| Sbjct 363 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 422 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| |||||||| || | | | || | | ||| ||||| || || Sbjct 423 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 482 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| || | | || | |||||||| ||||| Sbjct 483 GATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCAC 542 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| ||||||||||| || ||||| Sbjct 543 TTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||| ||||| | ||||| ||||| |||||||| || | Sbjct 851 TTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGTTTGCCAG 910 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | |||| | | || ||||| || || || ||||| ||||| ||| |||||| ||| Sbjct 911 CAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATTTTTGCCTTT 969 Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||||| | | |||||||| |||||||| | || | || || ||||| || || Sbjct 970 ACATTGT-CGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTTCCAGTGAGGGT 1028 Query 138597 TTTTACAAAAATCTGCAT 138614 ||||||||| || ||||| Sbjct 1029 TTTTACAAAGATTTGCAT 1046 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || ||||| ||||| ||||| | | Sbjct 625 GACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCAAGTTGCTTACCTGCA 684 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || || | || ||||||||||| || || || ||||| ||| |||| | ||| | Sbjct 685 AAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTC-CTGAATTTTGGCTTTGAC 743 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| ||||| || | || | |||||| ||||| || || || Sbjct 744 ATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTT 803 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 804 TACAAAGATCTGCAT 818 >seq87541 Length=1860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||| || | | |||||||||| || |||||||||||| | || | ||||||| Sbjct 6 ACTAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCG 65 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || || | |||| |||||||||||||||||||| || ||||| ||||| | Sbjct 66 AGCTGCTTCCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGG 125 Query 138526 AT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 || || | || |||| || | ||| || | ||||| ||||| | || | || || Sbjct 126 ATCTTGGTCTTGACATTG-TCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTT 184 Query 138585 ACCAGTCAGAG--TTTTTACAAAAATCTGCATGG 138616 || || || | |||| || || |||||||||| Sbjct 185 CCCCGTTAGGGNNTTTTCACGAAGATCTGCATGG 218 >seq95098 Length=1037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||||||||||||||| || || |||||| || ||||||||||| |||| Sbjct 879 TTGATTCCTTTTGAATGTTGTAATCCGCCAAAGTACGGCCATCTTCGAGTTGTTTTCCGG 938 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 | |||| || | ||||| |||||||| || ||||| ||||| Sbjct 939 CAAAGATCAGCCTTTGTTGATCCGGAGGAATCCCTTCCTTGTC 981 >seq55405 Length=4719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || ||||| || || ||| ||| ||||| ||||| ||||| | | Sbjct 2313 GACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCA 2372 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | ||| || || || || || ||||| ||||| ||| |||| | || | Sbjct 2373 AAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTC-CTGAATTTTAGCCTTCAC 2431 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || || ||||| | ||| ||||| | || | ||||| ||||||| || || Sbjct 2432 ATTATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTT 2491 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 2492 AACAAAAATCTGCAT 2506 >seq35333 Length=5286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| ||| | || | | || ||||| ||||||||||| || Sbjct 420 CCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTGCA 361 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | ||||| || ||||| || | |||| |||||||| || ||||| || Sbjct 360 AGGGTCCTGCCA-TCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGTGG 302 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || |||||| || | | || | ||||||| |||||| Sbjct 301 GATTCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCGGAACTCTCCAC 242 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | |||||||| || || ||||| || || ||||||||| || Sbjct 241 CTCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCATGCCT 190 >seq7293 Length=4729 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | |||||||||| ||||||||||||||| | ||||| || || Sbjct 4686 AACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCTTC 4627 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | || || |||| | || | | ||| |||||||| || || ||||| ||||| | Sbjct 4626 CAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGAATTCCTTCCTTGTC-CT 4568 Query 138525 GATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 || | || | |||| ||| || | |||||||| ||| ||||| | || | || Sbjct 4567 GAATCTTAGCCTTAACGTTG-TCAATGGTGTCGGAACTCTCAACCTCAAGAGTGATGGTC 4509 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| || || || |||||||| Sbjct 4508 TTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 4477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495479905854240