Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq95098 111 1e-19 seq7711 107 1e-18 seq119621 104 2e-17 seq61388 104 2e-17 seq35333 100 2e-16 seq87541 98.7 7e-16 seq93401 91.5 1e-13 seq7293 87.8 1e-12 seq55405 82.4 5e-11 >seq95098 Length=1037 Score = 111 bits (122), Expect = 1e-19 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || ||||||||||||||| ||| | | | || |||| ||| Sbjct 642 ATGCAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAGAGTGCGGCCATCGTCTAGTTG 701 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG-AATTCCTTCCTTGTCACAAAT-T 15090 ||||| || | |||||||| || ||||| || |||||||||||| || ||| | Sbjct 702 CTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGGAATTCCTTCCTTATCTTGAATCT 761 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 |||| || ||| | || || |||||| | | || || || | || || || ||||| Sbjct 762 TTGC-CTTAACATTATCAATTGTATCGGAACTCTCAACTTCAAGAGTTATCGTCTTACCC 820 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||||||||||||| Sbjct 821 GTTAGGGTTTTAACAAAAATTTGCATA 847 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || ||||| || || |||||||||||||| || | || | || || | ||| Sbjct 414 TGGAGAGTAGATTCCTTCTGTATGTTGTAATCTGCAAGGGTCCTGCCATCCTCAAGCTGT 473 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| |||||| || || ||||||||||||||| || ||||| Sbjct 474 TTTCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGGATTTTA 533 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || |||| || || ||||| || || ||||| || Sbjct 534 GCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACTTCCAAGGTGATTGTCTTACCAGTG 593 Query 15154 AGAGTTTTTAC-AAAAATTTGCAT 15176 || || || || |||||||||||| Sbjct 594 AGGGTCTTAACNAAAAATTTGCAT 617 >seq7711 Length=5731 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || || |||||||| ||| | ||| | || || | || Sbjct 501 TGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCCTCCAGCTGC 442 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||||||||| || || |||||||||||||||||| ||| ||| Sbjct 441 TTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCCTGAATCTTG 382 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || ||||| | || || || || ||||| ||||| |||||| Sbjct 381 GCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACCTCCAAAGTAATTGTTTTCCCTGTC 322 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 321 AGGGTCTTAACAAAGATCTGCATA 298 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 |||||||||||| |||||||| ||||| ||||| || || | | | || || || | Sbjct 274 ATGAAGGGTAGACTCTTTTTGAATGTTATAATCTGCCAAGG-TGCGACCATCCTCCAACT 216 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 | || ||||| | |||| | |||||| || ||| || ||||||||||| || | Sbjct 215 GCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCT 156 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || || || | || ||||| ||| | | || || || | ||||||||| || |||| Sbjct 155 TGGCCTTCACGTTATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATGGTCTTCCCTG 96 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || ||||||||| Sbjct 95 TTAGGGTTTTGACGAATATTTGCATA 70 >seq119621 Length=933 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| ||||| || || ||| | | | || || Sbjct 469 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 410 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||||| | ||||| | ||| ||||| ||| || || |||||||| Sbjct 409 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 350 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || | || || || ||| |||| || || || || || |||||| Sbjct 349 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 290 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||||||||| ||||||||| Sbjct 289 CCAGTCAGGGTTTTTACAAAGATTTGCATA 260 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || || || ||||||||||| ||| | || | || || | ||| Sbjct 920 ATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTG 861 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | ||||| | ||| ||||| |||||| || ||||| || || || Sbjct 860 CTTCCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGAATCCCCTCCTTATCCTGTATCTT 801 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || || || | | || || || ||||| |||||||| ||||| Sbjct 800 GGCTTTCACATTGTCAATTGTGTCAGAACTCTCCACCTCCAAGGTGATGGTTTTTCCTGT 741 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||||||| |||||| Sbjct 740 AAGAGTCTTCACAAAAATCTGCATA 716 >seq61388 Length=1455 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| ||||| || || ||| | | | || || Sbjct 382 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCA 441 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||||| | ||||| | ||| ||||| ||| || || |||||||| Sbjct 442 AGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 501 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || | || || || ||| |||| || || || || || |||||| Sbjct 502 ATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTA 561 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||||||||| ||||||||| Sbjct 562 CCAGTCAGGGTTTTTACAAAGATTTGCATA 591 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||| || || || | | | || || | |||| Sbjct 844 TGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCATCCTCAAGTTGT 903 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | ||||| | || ||||| ||| || ||||||||||| |||||| Sbjct 904 TTGCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATTTTT 963 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | || || || ||| |||| || || | || || || || || || Sbjct 964 GCCTTTACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATAGTCTTTCCAGTG 1023 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| |||||||| Sbjct 1024 AGGGTTTTTACAAAGATTTGCAT 1046 >seq35333 Length=5286 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| || | || | || || | ||| Sbjct 396 TGAAGAGTCGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTGCCATCCTCAAGCTGT 337 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| |||||| || || ||| ||||||||||| || |||||| Sbjct 336 TTGCCAGCGAAGATCAGACGCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGGATTTTG 277 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||| | | || || || ||||| || |||||||| || Sbjct 276 GCCTTAACATTATCAATTGTGTCGGAACTCTCCACCTCCAAGGTGATTGTTTTACCCGTG 217 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 216 AGTGTTTTAACGAAGATCTGCAT 194 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| || || || ||||| ||||| || | | | || |||| || Sbjct 625 ATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCAAGTGTGCGGCCATCCTCTAGCTG 566 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | || | | ||||| || ||||||||| |||||||| ||| || Sbjct 565 CTTTCCAGCGAAGATAAGCCTTTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTT 506 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||||||| | || || ||||| | | || || || || || || || || || || Sbjct 505 AGCTTTTACATTGTCAATTGTATCAGAACTCTCCACCTCCAATGTTATTGTCTTCCCAGT 446 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| |||||| Sbjct 445 GAGTGTCTTTACAAAAATCTGCATA 421 >seq87541 Length=1860 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| || ||||| || || || || |||||||| ||| || |||| |||| || Sbjct 6 ACTAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCG 65 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | || | |||||||||||| ||||||||||||||||| Sbjct 66 AGCTGCTTCCCAGCGAAGATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGG 125 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || ||| | || || ||||| | || || |||||||| ||||| || Sbjct 126 ATCTTGGTCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTTC 185 Query 15148 CCTGTCAGAG--TTTTTACAAAAATTTGCAT 15176 || || || | |||| || || || ||||| Sbjct 186 CCCGTTAGGGNNTTTTCACGAAGATCTGCAT 216 >seq93401 Length=1125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || ||||| || |||||||||||| | | | | ||||| ||||| Sbjct 1104 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCCAATTG 1045 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| || ||| |||||||||||||| || |||||| Sbjct 1044 CTTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAATTCCTTCCTTATCTTGAATTTT 985 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || ||||| | | || || || | |||||| || || || || Sbjct 984 GGCCTTGACGTTGTCGATCGTATCAGAACTCTCGACCTCAAGGGTAATCGTCTTCCCGGT 925 Query 15153 CA-GAGTTTTTACAAAAATTTGCAT 15176 | | ||||| || || || ||||| Sbjct 924 TANGGGTTTTGACGAAGATCTGCAT 900 >seq7293 Length=4729 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| || | ||| || || ||||| || || || || |||||||| ||| Sbjct 4703 CCTCCACGCAGCCTGAGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCA 4644 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || || || || ||| | ||||| | ||| ||||| ||| Sbjct 4643 AGGGTACGGCCATCTTCCAACTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCCGGCGGA 4584 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| || || || | || || || ||| | | || || Sbjct 4583 ATTCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCAACC 4524 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||||||| || || || || |||||| Sbjct 4523 TCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCATA 4476 >seq55405 Length=4719 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | || || ||||| || || || || || ||||||||||| Sbjct 2964 CCACCTCGAAGGCGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCA 3023 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || || ||||| | |||| | ||| ||||| ||| Sbjct 3024 AGAGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 3083 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||||||| || ||| | || ||||| || | | || || Sbjct 3084 ATACCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTCTCAACT 3143 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| || || || ||||| ||||| || |||||| Sbjct 3144 TCCAAAGTGATAGTTTTTCCAGTAAGGGTTTTCACAAAGATCTGCATA 3191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356842561398470