Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq90076 111 2e-19 seq51752 107 3e-18 >seq90076 Length=2428 Score = 111 bits (122), Expect = 2e-19 Identities = 475/740 (64%), Gaps = 16/740 (2%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| || |||||| || ||||| || || || || |||| | | | ||| ||||| | Sbjct 2187 CCAACAGCCTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCGTTCATCCCAA 2128 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | | || ||||| || ||| ||||||| |||| || || ||||| || ||| Sbjct 2127 CCAACGCACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCCTTCA 2068 Query 159864 CAATCTGCGA-GACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 | ||| | || || || | | ||| | || || | | | || | | Sbjct 2067 CTATCGCCTTTNACGCGCTCCTCGCTGATCTTCGTCTTCATAAGGCCGT---AGAGCAAG 2011 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || || || |||||||| ||||||||||| || ||||| |||||||| || | | | | Sbjct 2010 CATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAAT 1951 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAA 160041 |||||||| | || ||| ||| |||||||| || | ||||||||| | | | || || Sbjct 1950 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAAGAA 1892 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 || || |||||| || || || | || | ||| | | | | | || | | | Sbjct 1891 TATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGA---ATGTCTCGGAGCCGTC 1835 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | |||| |||||| | ||||| || |||| |||||||| |||| |||| Sbjct 1834 GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCG 1775 Query 160162 AAACAATCTGTCCTGCTCCTTCACA-TCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 || | || || | |||| | || ||||| || | | || ||||||| Sbjct 1774 GAAGAGGTGGTTCT-TTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACA 1716 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || ||||| || ||||| ||| ||||| |||| | | Sbjct 1715 TTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCT-CGGCG 1657 Query 160281 AC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCC 160339 || || || || | ||||||| | ||||| | ||| | ||||||| ||| Sbjct 1656 ACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCG 1597 Query 160340 GCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCC 160399 || ||||| || | ||||||| ||||| ||| ||||||| | | || | ||||| Sbjct 1596 GCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGC---TTTCC 1540 Query 160400 CAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCA 160459 ||||| | || || | ||| || || || ||||| ||||| | |||| || Sbjct 1539 CAGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCT 1480 Query 160460 GTTTTGTACATGGCCCAGAT 160479 | |||||||| ||||||| Sbjct 1479 TTCTTGTACATCTCCCAGAT 1460 >seq51752 Length=12828 Score = 107 bits (118), Expect = 3e-18 Identities = 434/674 (64%), Gaps = 15/674 (2%) Strand=Plus/Minus Query 159734 CCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAG 159793 ||||| || ||| || |||||| || ||||| || || || || |||| | | | | Sbjct 688 CCGAGCGCTCCCAACAGCCTGTCCGCTACAAACTCTATATACTGACTCATCAACGCCCCG 629 Query 159794 TTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACC 159853 || ||||| | || | | || ||||| || ||| ||||||| |||| || || ||| Sbjct 628 TTCATCCCAACCAACGCACACGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACC 569 Query 159854 GCTTCGGTCACAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTA 159913 || || |||| ||| | || || || | | ||| | || || | | Sbjct 568 GCGTCCTTCACTATCGCCTTTACGCGCTCCTCGCTGATCTTCGTCTTCATAAGGCCGT-- 511 Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 | || | ||| || || |||||||| ||||||||||| || ||||| |||||||| || Sbjct 510 -AGAGCAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAG 452 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | | |||||||| | || ||| ||| |||||||| || | ||||||||| | Sbjct 451 AAGGTTAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCC 393 Query 160034 CTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTT 160092 | | || || || || |||||| || || || | || | ||| | | | | | Sbjct 392 CGAGAAGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGA---ATGTCTC 336 Query 160093 GGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTC 160152 || | | | | |||| |||||| | ||||| || |||| |||||||| || Sbjct 335 GGAGCCGTCGATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTC 276 Query 160153 GACGGCGTTAAACAATCTGTCCTGCTCCTTCACA-TCCTTGATCAGAGTAGCAATCAGCT 160211 || |||| || | || || | |||| | || ||||| || | | || Sbjct 275 GATGGCGCGGAAGAGGTGGTTCT-TTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAA 217 Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271 ||||||||||| | ||| | || ||||| || ||||| ||| ||||| | Sbjct 216 GGGAGTACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGG 157 Query 160272 CCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 ||| | | || || || || | ||||||| | ||||| | ||| | ||| Sbjct 156 CCT-CGGCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCG 98 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 |||| ||| || ||||| || | ||||||| ||||| ||| ||||||| | | || Sbjct 97 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGG 38 Query 160391 CTCTTTTCCCAGTG 160404 | |||||||||| Sbjct 37 C---TTTCCCAGTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793901419159520