Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9706 116 4e-21 seq119621 111 2e-19 seq61388 111 2e-19 seq4456 109 6e-19 seq7711 100 3e-16 seq7293 100 3e-16 seq55405 96.9 4e-15 seq35332 87.8 2e-12 seq87541 86.0 7e-12 >seq9706 Length=10732 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| ||| |||||| || |||||||| |||| | ||| || |||| || Sbjct 1004 CACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGTCCGTCCTC 1063 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||| || || | ||||||||||| | || | | ||||||||| Sbjct 1064 GAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTG 1123 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | | | | ||||| || ||||| || | ||| ||||| || Sbjct 1124 AATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTT 1183 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| || ||||| || ||||| ||||| ||| Sbjct 1184 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 1217 >seq119621 Length=933 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| || ||||| | ||||| || | || || || || ||||| || || Sbjct 452 CTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAA 393 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| ||| || ||||| ||| Sbjct 392 AATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATTTTAGCCTTGA-CGT 334 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | ||||| |||||| |||| || || ||||| || ||||| ||||| | Sbjct 333 TGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTA 274 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 273 CAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| || ||||| | ||||| || | || || || || ||||| || || Sbjct 399 CTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAA 458 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| ||| || ||||| ||| Sbjct 459 AATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATTTTAGCCTTGA-CGT 517 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| |||||| |||| || || ||||| || ||||| ||||| | Sbjct 518 TGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTA 577 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 578 CAAAGATTTGCAT 590 >seq4456 Length=3005 Score = 109 bits (120), Expect = 6e-19 Identities = 146/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| |||| ||||| ||| |||| || || ||||| |||||||| Sbjct 2873 TCCTTCTGAATATTGTAATCGGCCAGAGTACGCCCGTCTTCAAGTTGCTTTCCGGCGAAG 2814 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||||||||| || | || | | ||| ||||| |||||| ||||| ||| Sbjct 2813 ATCAAGCGCTGCTGATCCGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTT 2755 Query 46523 G-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||| ||| ||| || || || | || ||||| ||||| || || ||||| Sbjct 2754 GTCGATCGTATCGGAACTC---TCGACTTCAAGAGTTATGGTCTTGCCGGTTAGGGTTTT 2698 Query 46579 AACAAAGATTTGCATTTTG 46597 || ||||| ||||| ||| Sbjct 2697 CACGAAGATCTGCATATTG 2679 >seq7711 Length=5731 Score = 100 bits (110), Expect = 3e-16 Identities = 156/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| || | || ||||| || |||||||| || | ||||| | | | Sbjct 513 CGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCA 454 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || ||||| |||||||| || | || | | |||||| Sbjct 453 TCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTG 394 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||| | ||| | | | ||| || |||| ||||| |||| || Sbjct 393 TCCTGAATCTT-GGCTTTAACGTTGTCAATCGTATCAGAGCTC---TCCACCTCCAAAGT 338 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || ||||| || ||||||||||| ||||| Sbjct 337 AATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq7293 Length=4729 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| | ||| || |||| ||||||||||| |||||||| Sbjct 4440 CTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAA 4381 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | | |||||||||| ||||| ||||| | Sbjct 4380 GATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTT 4321 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || || | ||||| || ||||| |||| ||||| Sbjct 4320 ATCGATGGTATCGGAGCTC---TCGACCTCGAGAGTGATTGTCTTGCCGGTCAAAGTTTT 4264 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4263 CACGAAGATCTGCAT 4249 >seq55405 Length=4719 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| ||| |||||||||||||||||| || | | ||||||| | || || Sbjct 2298 ACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCC 2357 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| | |||||| || | || | | ||||||||| Sbjct 2358 AGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGA 2417 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTT 46561 || || ||| | | | || ||||| ||| || || |||| ||||| ||| Sbjct 2418 ATTTTAGCCTTCACATTATCAACAGTGTC---CGAACCCTCAACCTCCAGGGTGATAGTT 2474 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || |||| || |||||||| || |||||| Sbjct 2475 TTTCCAGTCAAGGTCTTAACAAAAATCTGCATT 2507 >seq35332 Length=499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| |||| | || || | || || | ||||| || || || Sbjct 208 TCCTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCTTCCAATTGCTTTCCTGCAAAG 149 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 148 ATCAATCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 90 Query 46523 G-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||||| ||| || || || | |||||||| ||||| || || ||||| Sbjct 89 GTCAATCGTGTCGGAACTC---TCAACTTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 33 Query 46579 AACAAAGATTTGCATTTTG 46597 || ||||| ||||| ||| Sbjct 32 GACGAAGATCTGCATATTG 14 >seq87541 Length=1860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| ||||||||||| || ||||| Sbjct 23 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGCTGCTTCCCAGCGAA 82 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||| | || | | |||||||| |||||| |||||| | Sbjct 83 GATGAGACGCTGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATT 142 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG--TTTTA 46579 | | || || || || || || | || ||||| || ||||| || | |||| Sbjct 143 GTCAATGGTATCAGAAGACTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGNNTTTTC 202 Query 46580 ACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 203 ACGAAGATCTGCAT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564347146221840