Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7711 102 6e-17 seq35333 96.9 2e-15 seq119621 95.1 8e-15 seq61388 95.1 8e-15 seq93401 89.7 4e-13 >seq7711 Length=5731 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | || |||| |||| || | ||| ||| || || ||||| ||||| || Sbjct 525 CCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCA 466 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||| || || || ||||||| |||||||||||||||| || Sbjct 465 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGA 406 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| | | | || | || | ||| | | | || || | ||| ||||| Sbjct 405 ATTCCTTCCTTGTC-CTGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTCTCCAC 347 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||||||||| || || | || || || ||||||||||| Sbjct 346 CTCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 >seq35333 Length=5286 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||||||||| |||| || | ||| ||| || || || || ||||| || Sbjct 420 CCTCCCCTCAAACGCAGAACCAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCTGCA 361 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| || | ||||| || | || || | |||||||||||||| || Sbjct 360 AGGGTCCTGCCATCCTCAAGCTGTTTGCCAGCGAAGATCAGACGCTGCTGATCCGGTGGG 301 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| |||| | | | |||||| | || ||||| Sbjct 300 ATTCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATTGTGTCGGAACTCTCCACC 241 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || |||||||||||||| | ||||| ||||||||||||||| Sbjct 240 TCCAAGGTGATTGTTTTACCCGTGAGTGTTTTAACGAAGATCTGCATG 193 >seq119621 Length=933 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| || | || || ||||| || ||||| || || Sbjct 488 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 429 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| || | |||||| || ||||||| || | |||||| || | || Sbjct 428 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 369 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | || || ||||| ||||| || | ||| | | || |||| | |||||||| Sbjct 368 GATACCCTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCA 310 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||||||||| || | |||||||| ||||| ||||| Sbjct 309 CTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| || | || || ||||| || ||||| || || Sbjct 363 GCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGC 422 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| || | |||||| || ||||||| || | |||||| || | || Sbjct 423 AAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 482 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | || || ||||| ||||| || | ||| | | || |||| | |||||||| Sbjct 483 GATACCCTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCA 541 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||||||||| || | |||||||| ||||| ||||| Sbjct 542 CTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 >seq93401 Length=1125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | ||| | |||| |||||| || || || ||||||||||| ||| |||| Sbjct 1112 AGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCT 1053 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 |||||||| |||||| | || || | |||||||||||| | || | ||||| || || Sbjct 1052 TCCAATTGCTTCCCGGCGAAGATCAGACGCTGCTGATCGGGAGGAATTCCTTCCTTATCT 993 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 ||||| || | ||| | | | || || | || || || || | ||||| || Sbjct 992 TGAATTTTGGCCTTGA-CGTTGTCGATCGTATCAGAACTCTCGACCTCAAGGGTAATCGT 934 Query 39687 TTTACCCGTTAA-AGTTTTTACGAAGATCTGCATG 39720 || || |||| ||||| ||||||||||||||| Sbjct 933 CTTCCCGGTTANGGGTTTTGACGAAGATCTGCATG 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346835569391486