Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2715 127 3e-24 seq28723 100 4e-16 seq47021 91.5 2e-13 seq90076 89.7 6e-13 seq51752 89.7 6e-13 seq7588 82.4 9e-11 >seq2715 Length=12174 Score = 127 bits (140), Expect = 3e-24 Identities = 310/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| || || | | || ||||| || || |||| ||||| || |||| || Sbjct 2214 ATCAAGTATGTCTGCCCTGTTAGTTGCTGCAATCACAATGATACCAGT---GTTACCCTC 2158 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||| ||||||||||||||||||| ||||| || | |||||||||| || Sbjct 2157 GAAACCATCCATTTCTGTCAAAAGCTGGTTAAGCGTTTGCTCTCTTTCATCATTCCCTCC 2098 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | |||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 2097 CCCAATGCCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 2038 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||| || | | | |||| || ||||| || || || || || |||||| Sbjct 2037 AGGAGCATTCTC-CTTG-GCCTTCTTGAACAGATCTCGGACTCGAGATGCACCAACACCA 1980 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | || | || || || || || ||| || Sbjct 1979 ACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGAACTCCAGCTTCCCC 1921 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| ||||||||||| || || ||||| ||| | || || | || Sbjct 1920 AGCAATTGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACGCC 1861 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||||| || || | | ||||||| || | ||| || || ||||| | Sbjct 1860 TTTAGGAATGCGAGCTCCGACAGCTGTGAATCTCTCTGGCTTCTTGAGGAACTCCACCAC 1801 Query 16331 CTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||| || || | ||| || |||||| || ||||||| Sbjct 1800 CTCCATGAAATCTTGTTTAGCTTCGTCAACTCCTGCAACATC 1759 >seq28723 Length=7348 Score = 100 bits (110), Expect = 4e-16 Identities = 197/286 (69%), Gaps = 18/286 (6%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || ||||||||||| ||||| || || || | ||||||||| || Sbjct 2933 AAAACCATCCATTTCAGTCAAAAGCTGATTAATTGTCTGCTCTCTTTCATCATTTCCT-- 2990 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 2991 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 3050 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCC 16144 ||||| |||| |||||| | ||||| | ||||| ||| |||| || || Sbjct 3051 CATGGTGCCTTTGA-TTTCGCCTTC----TCAAACAAATCCC--TCACTCTTGATGCACC 3103 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 16204 ||||||||||||| ||| ||||| | || || | ||| || || || || | Sbjct 3104 AACACCAACAAACAACTCAACAAATTCTGATGCCGCACAAGAGAAAAATGGCACGCCGGC 3163 Query 16205 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 ||| || |||| |||| || | | ||||| || || |||||| Sbjct 3164 TTCTCCAGCAACTGCTCTAGCCAATAAGGTCTTCCCAGTTCCTGGC 3209 >seq47021 Length=9578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAGACTGGATGG 111595 |||| || ||| ||||| | || ||||| |||| |||||| |||| | | || Sbjct 3815 GACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCTTACCTCTTAAAGGTTCAAGGG 3756 Query 111596 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGA 111655 ||| |||||| || ||| ||||||| ||| |||| || || || || || ||| Sbjct 3755 AAGGTTG-TGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTATTGGAATTCACAAGGA 3697 Query 111656 AGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGC 111715 ||||||||||||| | | | |||||| | | |||||||| | ||||| || || Sbjct 3696 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACGCATGC 3637 Query 111716 AACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | | || || || ||||||||||| || || ||||| || Sbjct 3636 ATCTCCCACACTTTTCAACGCTGGAACTCCGAGACCGCA 3598 >seq90076 Length=2428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || |||||||| | || || || || || || || || |||||||| || ||| Sbjct 1850 TTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTT 1909 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| || | |||||| |||||| Sbjct 1910 TGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAG 1969 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || ||||||||||| ||| Sbjct 1970 TTAATCTCGCGAGACGAGGGACTTCAC 1996 >seq51752 Length=12828 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || |||||||| | || || || || || || || || |||||||| || ||| Sbjct 342 TTCGCGGAGCGACTAATTGCCTTCGCTTGCGTGGAAGGAATATTCTTCTCGGGAAGCTTT 401 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| || | |||||| |||||| Sbjct 402 TGCGCAATATTTTGGCTAAAAAAGCGCGGATTAATGCCGGGATTAACCTTCTCAAACGAG 461 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || ||||||||||| ||| Sbjct 462 TTAATCTCGCGAGACGAGGGACTTCAC 488 >seq7588 Length=9051 Score = 82.4 bits (90), Expect = 9e-11 Identities = 175/253 (69%), Gaps = 14/253 (6%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAA-CAATAC-CTGTTTCGTTATCA 15974 |||||| || ||| |||||| || || || || | || || | | ||||||| | | Sbjct 6178 ATCAAGAATTTCAGGGCGATTTGTAGCTGCAATAAAAATCACTCCACTGTTTCC--AGTA 6235 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||| ||||| || || | | |||||| | |||||| |||| ||||||||| || Sbjct 6236 AAACCGTCCATTTCAGTAAGCAACTGGTTTAAAGTTTGCTCCCTTTCATCATTTCCTCC- 6294 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| |||| | | || ||||||| ||||| ||||||||||| || || | | Sbjct 6295 --ACCAATTCCAGTCCCTCTCTGTCTTCCCACAGCATCTATCTCATCAATAAAAACCAAG 6352 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||||| || ||||| || || | || | ||| | || || ||||| |||| Sbjct 6353 CATGG-CGA-ATTCGCCTTCGCCTTGTTGAACAAATCTCTCACTCGTGAAGCGCCTACAC 6410 Query 16150 CAACAAACATCTC 16162 |||||||||| || Sbjct 6411 CAACAAACATTTC 6423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619763628902240