Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq90076 120 4e-22 seq51752 120 4e-22 >seq90076 Length=2428 Score = 120 bits (132), Expect = 4e-22 Identities = 331/502 (66%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || || ||||| | ||| || |||| | ||| ||||| | ||| Sbjct 1995 TGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATTAATCCG 1936 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || ||||||||||| || || ||||| ||||| || ||||| || || ||||| || Sbjct 1935 CGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTCCACGCAA 1876 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | ||| ||||| || || | ||| || ||||| ||| | ||| ||||| Sbjct 1875 GCGAAGGCAATTAGTCGCTCCGCGAATGTCTCG-GAGCCGTCGATCCAATCGAGGGCCCA 1817 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 |||||||| | | ||| || || |||| |||||| ||| || || |||||||| Sbjct 1816 CTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTGGTTCTTTTC 1757 Query 119747 AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTC 119806 | || || || || | || | ||| ||||| | || |||| | || Sbjct 1756 TTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTACATTTCGGAGTGAATGTTCTC 1697 Query 119807 -ATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAA 119865 |||| | ||| || |||| || | ||| || |||| | ||| ||||| | | Sbjct 1696 GATTGCG-ATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGGACTTCTTTCATGA 1638 Query 119866 AATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGT 119925 | || | || |||||| | ||| || || ||||| | |||||||| || | || || Sbjct 1637 ACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGT 1578 Query 119926 ACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACA 119985 | ||||| | | || | | | | || ||| ||||| | ||| | |||| Sbjct 1577 GAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGTGACGGAGATCCTGCGACA 1518 Query 119986 AGTCCACCTCTTCAGCTGTCCA 120007 |||| || || || || ||||| Sbjct 1517 AGTCGACTTCCTCCGCCGTCCA 1496 >seq51752 Length=12828 Score = 120 bits (132), Expect = 4e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || || ||||| | ||| || |||| | ||| ||||| | ||| Sbjct 487 TGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTTAATCCCGGCATTAATCCG 428 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || ||||||||||| || || ||||| ||||| || ||||| || || ||||| || Sbjct 427 CGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAATATTCCTTCCACGCAA 368 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | ||| ||||| || || | ||| || ||||| ||| | ||| ||||| Sbjct 367 GCGAAGGCAATTAGTCGCTCCGCGAATGTCTCG-GAGCCGTCGATCCAATCGAGGGCCCA 309 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 |||||||| | | ||| || || |||| |||||| ||| || || |||||||| Sbjct 308 CTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCGCGGAAGAGGTGGTTCTTTTC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047317367600