Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2715 123 3e-23 seq47021 104 3e-17 seq28723 102 1e-16 >seq2715 Length=12174 Score = 123 bits (136), Expect = 3e-23 Identities = 303/457 (66%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | || || Sbjct 2214 ATCAAGTATGTCTGCCCTGTTAGTTGCTGCAATCACAATGATACCAGTGTTACCCTCGAA 2155 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| ||||| || | |||||||||| || | Sbjct 2154 ACCATCCATTTCTGTCAAAAGCTGGTTAAGCGTTTGCTCTCTTTCATCATTCCCTCCCCC 2095 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | |||| | | ||| ||| || |||||||| ||||||| || ||||| || || Sbjct 2094 AATGCCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGG 2035 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 ||| || ||| | | || ||||| || || | || || ||||||||||| Sbjct 2034 AGCATTCTCCTTGGCCTTCTTGAACAGATCTCGGACTCGAGATGCACCAACACCAACAAA 1975 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522 |||||| ||||| | | | | | || | || || || || || ||| || |||| Sbjct 1974 CATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGAACTCCAGCTTCCCCAGCAA 1916 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582 | || ||| ||||||||||| || || ||||| ||| | || || | || | Sbjct 1915 TTGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACGCCTTTAG 1856 Query 9583 GAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTT 9642 |||| || || | | ||||||| || | |||||| || ||||| | ||| Sbjct 1855 GAATGCGAGCTCCGACAGCTGTGAATCTCTCTGGCTTCTTGAGGAACTCCACCACCTCCA 1796 Query 9643 CCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || | ||| || |||||| || ||||||| Sbjct 1795 TGAAATCTTGTTTAGCTTCGTCAACTCCTGCAACATC 1759 >seq47021 Length=9578 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||||||||| || || ||||| ||||| || || || | ||| || ||||| | ||| Sbjct 3597 CTGCGGTCTCGGAGTTCCAGCGTTGAAAAGTGTGGGAGATGCATGCGTGAACCATCTTTG 3656 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||||| | | |||||| | | |||||||||| || ||| ||| || || || || Sbjct 3657 GGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGC 3716 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| || || |||||| | | || | || || || | || | Sbjct 3717 AACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTCCCTT-GAACCTTTAAGAGGT 3775 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||| | ||||||||| || | ||| | ||||| Sbjct 3776 AAGACCTCTCAAGGGTTTTAAAGCCAAAGTAATCATAGTCAAAATCCCG 3824 >seq28723 Length=7348 Score = 102 bits (112), Expect = 1e-16 Identities = 191/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 |||||||||||| || |||||||| || ||||| || || || | ||||||||| || Sbjct 2933 AAAACCATCCATTTCAGTCAAAAGCTGATTAATTGTCTGCTCTCTTTCATCATTTCCT-- 2990 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 2991 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 3050 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 |||||| ||| || | ||||| | ||| | || ||| || || |||||| Sbjct 3051 CATGGTGCCTTTGATTTCGCCTTCTCAAACAAATCCCTCACTCTTGATGCACCAACACCA 3110 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 ||||||| ||| ||||| | || || | ||| || || || || | ||| || Sbjct 3111 ACAAACAACTCAACAAATTCTGATGCCGCACAAGAGAAAAATGGCACGCCGGCTTCTCCA 3170 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 |||| |||| || | | ||||| || || |||||| Sbjct 3171 GCAACTGCTCTAGCCAATAAGGTCTTCCCAGTTCCTGGC 3209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589050533024080