Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq119621 118 7e-22 seq61388 118 7e-22 seq7711 105 4e-18 seq55405 104 2e-17 seq119983 86.0 4e-12 seq9706 84.2 1e-11 seq95098 82.4 5e-11 >seq119621 Length=933 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| ||||||||| ||||||||||| | ||| | | | |||| || Sbjct 698 AACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTC 639 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| ||||| || || | ||||| ||| | || | ||||||||||| Sbjct 638 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTG 579 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| || | || | ||| | ||| || || | || || ||||| Sbjct 578 AATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTTTT 519 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||||||||| |||||||| Sbjct 518 CCCCGTAAGAGTCTTCACAAATATCTGCAT 489 Score = 109 bits (120), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||| ||||| | ||| | ||| |||| || Sbjct 241 ACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCA 182 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || | ||||||||| | || | |||||||||||| | Sbjct 181 AGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGA 122 Query 34893 ATCTTCTG-TTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 || || | |||||| || |||| || || | || || || | ||| || | Sbjct 121 ATTTTNGGCTTTGAC--AT--TATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCG 66 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| ||||| ||||| ||||||||||||||| Sbjct 65 TTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 31 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | ||| | | | |||| || || || || || || || Sbjct 907 TCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGCTTCCCAGCGAAG 848 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||||||||| || ||||| ||| || Sbjct 847 ATCAATCTCTGCTGGTCTGGTGGAATCCCCTCCTTATCCTGTATCTTGGCTTTCACATTG 788 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||| || || | ||| ||||||||||| || |||||||||||| Sbjct 787 TCAATTGTGTCAGAACTCTCCACCTCCAAGGTGATGGTTTTTCCTGTAAGAGTCTTCACA 728 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 727 AAAATCTGCATA 716 >seq61388 Length=1455 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| ||||||||| ||||||||||| | ||| | | | |||| || Sbjct 153 AACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTC 212 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| ||||| || || | ||||| ||| | || | ||||||||||| Sbjct 213 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTG 272 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| || | || | ||| | ||| || || | || || ||||| Sbjct 273 AATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTTTT 332 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||||||||| |||||||| Sbjct 333 CCCCGTAAGAGTCTTCACAAATATCTGCAT 362 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||| ||||| | ||| | ||| |||| || Sbjct 610 ACCAAGTGCAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGTCCATCCTCA 669 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || | ||||||||| | || | |||||||||||| | Sbjct 670 AGTTGCTTACCTGCAAAAATAAGCCTTTGCTGGTCCGGAGGGATCCCCTCCTTGTCCTGA 729 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 || || |||||| || |||| || || | || || || | ||| || || Sbjct 730 ATTTTGGCTTTGAC--AT--TATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATCGT 785 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| ||||| ||||| ||||||||||||||| Sbjct 786 TTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 819 >seq7711 Length=5731 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | ||| |||| ||||| || ||| |||||||| || || |||| | Sbjct 525 CCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCA 466 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| |||||||| ||||| ||||| || | || ||||| || | || Sbjct 465 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGA 406 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| ||| ||| | |||| ||| | ||| || Sbjct 405 ATTCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACC 346 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 345 TCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCATA 298 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| | |||| | || |||| |||||||| || || || || Sbjct 717 TCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTACCAGCGAAG 658 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | ||| || ||||| ||||| ||||| || Sbjct 657 ATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTTTGCCTTGAC--AT 600 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| ||| || || | ||| || || ||||| || | |||||| Sbjct 599 --TATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGTCAAAGTCTT 542 Query 34967 CACAAAGATCTGCATA 34982 ||||| ||||||||| Sbjct 541 AACAAATATCTGCATA 526 >seq55405 Length=4719 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| ||||| ||||| || || | ||| | || |||| || Sbjct 2982 ACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCAAGAGTACGACCATCTTCA 3041 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || |||| ||||||||| | || | |||||||| || | Sbjct 3042 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 3101 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||| | || | ||| |||||| || | || || |||||| Sbjct 3102 ATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTCTCAACTTCCAAAGTGATAGTTTTT 3161 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||||||||||||| Sbjct 3162 CCAGTAAGGGTTTTCACAAAGATCTGCATA 3191 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||||||||| ||| || ||||| ||||||||||| | | Sbjct 3192 CCACCCCTGAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCA 3251 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| ||||| || || || ||||| || || | |||||||| | || Sbjct 3252 AGTGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGG 3311 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||| ||||| || || || |||||| || |||| || || | || Sbjct 3312 ATCCCTTCCTTATCCTGGATTTTTGCTTTGAC--AT--TATCAATGGTGTCGGAGCTTTC 3367 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||||||||| || || |||||||| || |||||||| ||||| Sbjct 3368 AACCTCAAGGGTTATGGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 >seq119983 Length=969 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| | |||| | || |||| |||||||| || || || || Sbjct 377 TCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTACCAGCGAAG 318 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | ||| || ||||| ||||| ||||| || Sbjct 317 ATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTTTGCCTTGAC--AT 260 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| ||| || || | ||| || || ||||| || | |||||| Sbjct 259 --TATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGTCAAAGTCTT 202 Query 34967 CACAAAGATCTGCATA 34982 ||||| ||||||||| Sbjct 201 AACAAATATCTGCATA 186 >seq9706 Length=10732 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/200 (71%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || |||||||| || || || | |||| | ||| | || || ||||| || ||||||| Sbjct 1023 TCCTTCTGAATATTGTAATCGGCCAAAGTC--CGTCCGTCCTCGAGCTGCTTGCCGGCAA 1080 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || || |||||||| | || | ||||||||||| ||||||| || || Sbjct 1081 AGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTCAC-- 1138 Query 34909 ATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | ||||| | ||| | ||| || || | || ||||| || ||||| || || Sbjct 1139 AT--TGTCGATGGTGTCCGAAGACTCCACCTCTAACGTAATGGTCTTCCCCGTTAGGGTT 1196 Query 34965 TTCACAAAGATCTGCATATT 34984 ||||| ||||||||||| || Sbjct 1197 TTCACGAAGATCTGCATCTT 1216 >seq95098 Length=1037 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | || |||| ||| | || ||| ||||| ||||| || || | Sbjct 388 TTCCTCCCCTCAAACGCAGGACCAGGTGGAGAGTAGATTCCTTCTGTATGTTGTAATCTG 447 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | | |||| || ||||||||||| ||||| || || || ||||| || | | Sbjct 448 CAAGGGTCCTGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGTG 507 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || || || ||||| | |||| ||| | |||| Sbjct 508 GAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAA 567 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC-AAAGATCTGCAT 34981 | || | ||| || || || || ||||| ||||| || ||| || ||||| Sbjct 568 CTTCCAAGGTGATTGTCTTACCAGTGAGGGTCTTAACNAAAAATTTGCAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324134522708976