Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq47021 134 2e-26 seq84074 89.7 6e-13 seq47681 89.7 6e-13 seq90076 86.0 7e-12 seq51752 86.0 7e-12 >seq47021 Length=9578 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | |||||||| ||| | |||| | ||| |||||||| || Sbjct 3275 ACCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTCGCAGCATGGGGACAATGCC 3334 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| | |||||||||||| | || | |||||| |||||| Sbjct 3335 ATTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTGCACGGATATTATGAATTGA 3394 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || ||||| || || ||| || | ||||||| || | |||||||| || Sbjct 3395 GACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGAT 3454 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 |||||| |||||||| ||| |||| Sbjct 3455 TCCTTCGATACTATCTTCTTTCAT 3478 >seq84074 Length=6830 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| ||||||||||| |||||| ||| | ||||| |||||||| || Sbjct 3446 CAAGCAAAGTCACAGTGTAGTCCCTCATCTCTAGATATAAGCTCATTTGAAAATGTCAAC 3387 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAG 19057 |||||||| | || || ||||| | ||||||||||| Sbjct 3386 CCAGGCATTAAACCCCTCTTTTTAAGCCAGAATATAG 3350 >seq47681 Length=10123 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | ||||| | || | || | | |||||| ||||| || Sbjct 5059 ACCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGAACAATTCC 5118 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| ||||||||| || | || | || || || ||| Sbjct 5119 ATTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTGCACGAATGTTGTGAACTGA 5178 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | |||||| || | |||||||| || Sbjct 5179 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATATAT 5238 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 |||||| |||||||||||| |||| Sbjct 5239 TCCTTCAATACTATCATCTTTCAT 5262 >seq90076 Length=2428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||| ||||| ||||| || || ||||||||||||| || || || || || || || Sbjct 2014 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 1955 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAA 19075 ||| || ||||| | ||| | ||||||| ||| ||||| | ||||| | ||| || | Sbjct 1954 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 1896 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTC 19111 ||||||| ||||| || || || |||| ||||| Sbjct 1895 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC 1860 >seq51752 Length=12828 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||| ||||| ||||| || || ||||||||||||| || || || || || || || Sbjct 506 CAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGT 447 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAA 19075 ||| || ||||| | ||| | ||||||| ||| ||||| | ||||| | ||| || | Sbjct 446 TAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGA 388 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTC 19111 ||||||| ||||| || || || |||| ||||| Sbjct 387 AGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561222480896880