Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq90076 84.2 3e-11 seq51752 84.2 3e-11 seq84074 82.4 9e-11 >seq90076 Length=2428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || ||||| ||||| || || | || || |||| || || || || || |||||| Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | ||||| | |||||||||||| ||||||| ||| || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 1895 Query 37292 GAAAATACCTTCAAC 37306 ||| || ||||| || Sbjct 1894 GAATATTCCTTCCAC 1880 >seq51752 Length=12828 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || ||||| ||||| || || | || || |||| || || || || || |||||| Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | ||||| | |||||||||||| ||||||| ||| || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCCCGAGAA 387 Query 37292 GAAAATACCTTCAAC 37306 ||| || ||||| || Sbjct 386 GAATATTCCTTCCAC 372 >seq84074 Length=6830 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| |||| || ||||||||| ||| | ||||| ||||| || || Sbjct 3446 CAAGCAAAGTCACAGTGTAGTCCCTCATCTCTAGATATAAGCTCATTTGAAAATGTCAAC 3387 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGC 37273 || ||||||||||| || ||||||| ||| ||||| || Sbjct 3386 CCAGGCATTAAACCCCTCTTTTTAAGCCAGAATATAGC 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591382849677680