Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7711 116 3e-21 seq55405 113 3e-20 seq9706 105 5e-18 seq95098 100 2e-16 seq119983 93.3 3e-14 seq67990 93.3 3e-14 seq35333 93.3 3e-14 seq119621 84.2 2e-11 seq61388 84.2 2e-11 >seq7711 Length=5731 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| || |||||||||| || || || || || |||||||||||||| | Sbjct 525 CCGCCCCTCAGGCGCAACACCAGGTGAAGAGTTGATTCCTTCTGAATATTGTAATCCGCA 466 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || |||| |||||| || ||||| |||| ||||| ||||||| ||| Sbjct 465 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGCTGATCCGGTGGA 406 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| || | | | || || ||||||| Sbjct 405 ATTCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCAATCGTATCAGAGCTCTCCACC 346 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || |||| || || ||||| |||||||| Sbjct 345 TCCAAAGTAATTGTTTTCCCTGTCAGGGTCTTAACAAAGATCTGCAT 299 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| || || |||| || | || | || |||| ||| Sbjct 730 ATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTG 671 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| || || || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 670 CTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTT 611 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| || ||||| ||||| || Sbjct 610 TGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGT 551 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || ||||| |||||||| Sbjct 550 CAAAGTCTTAACAAATATCTGCAT 527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| || ||||| | | | ||| | || ||||||||||| || ||||| Sbjct 262 CTCTTTTTGAATGTTATAATCTGCCAAGGTGCGACCATCCTCCAACTGCTTTCCAGCAAA 203 Query 48635 TATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 ||||||| ||||||||| |||||| | || |||||||| ||||| || || Sbjct 202 GATCAGTCTCTGTTGATCTGGTGGGATC-CCTTCCTTGTCTTGGATCTTGGCCTTCACGT 144 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || || ||| ||||| | ||||| || || || || | ||||| | Sbjct 143 TATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATGGTCTTCCCTGTTAGGGTTTTGA 84 Query 48754 CAAAAATCTGCAT 48766 | || || ||||| Sbjct 83 CGAATATTTGCAT 71 >seq55405 Length=4719 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||||||||||| | | | || | || |||| |||||||| ||||| Sbjct 2315 CTCCTTTTGGATATTGTAATCAGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCAAA 2374 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| || |||||||| ||| || || ||| Sbjct 2375 GATCAACCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATT 2434 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | |||| || || |||| ||||||| || || |||||||| ||||| || || || Sbjct 2435 ATCAACAGTGTCCGAACCCTCAACCTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTTAAC 2494 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 2495 AAAAATCTGCAT 2506 >seq9706 Length=10732 Score = 105 bits (116), Expect = 5e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||| | || || || ||| || |||||||||||||| | | | | || Sbjct 996 AGCCGAAGCACAAGGTGCAGTGTCGACTCCTTCTGAATATTGTAATCGGCCAAAGTCCGT 1055 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| |||||||| || || ||||| || |||| || | |||||| Sbjct 1056 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCC 1115 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||| | |||| Sbjct 1116 TTGTCTTGAATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCTAACGTA 1175 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || || || ||||| | ||||| || || ||||||||| ||| Sbjct 1176 ATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 1218 >seq95098 Length=1037 Score = 100 bits (110), Expect = 2e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| |||||||||||||||| ||| | | | |||| |||| ||| Sbjct 184 TGAAGGGTGGACTCTTTCTGAATATTGTAATCAGCGAGAGTCCTACCGTCCTCCAGCTGT 243 Query 48624 TTACCGGC-AAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || || || ||| || || | ||||||||| |||||| | ||||||||||| |||| Sbjct 244 TTCCCAGCNAAAAATAAGCCTCTGTTGATCTGGTGGGATC-CCCTCCTTGTCCTGGATCT 302 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC-ACCGTAATCGTTTTTCCC 48740 | ||| ||| | | | | || || |||||||||| | || ||||| || || Sbjct 303 TAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACCTCCNAAAGTTATCGTCTTCCCA 362 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| |||||||| Sbjct 363 GTTAATGTCTTCACAAAGATCTGCAT 388 >seq119983 Length=969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| || || |||| || | || | || |||| ||| Sbjct 390 ATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTACGGCCATCCTCCAGCTG 331 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| || || || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 330 CTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGGATCTT 271 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| || ||||| ||||| || Sbjct 270 TGCCTTGACATTATCAATGGTATCAGAACTCTCCACCTCCAAGGTGATCGTCTTTCCTGT 211 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || ||||| |||||||| Sbjct 210 CAAAGTCTTAACAAATATCTGCAT 187 >seq67990 Length=6038 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || ||||| ||| |||||||| |||||||| | Sbjct 4578 CCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGACTCCTTTTGAATGTTGTAATCTGCA 4519 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || ||||| || ||||| ||||| |||| || ||| ||||||| || Sbjct 4518 AGAGTTCGGCCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 4459 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 4458 ATACCCTCCTTGTC 4445 >seq35333 Length=5286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || ||||| || ||||||| || | || | || || Sbjct 630 ACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCAAGTGTGCGGCCATCCTCT 571 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || | |||||||||| |||| ||||||||||| | Sbjct 570 AGCTGCTTTCCAGCGAAGATAAGCCTTTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGA 511 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||||||| | | | || || ||||||||||| || || || || Sbjct 510 ATCTTAGCTTTTACATTGTCAATTGTATCAGAACTCTCCACCTCCAATGTTATTGTCTTC 451 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || ||||||||||||||||| Sbjct 450 CCAGTGAGTGTCTTTACAAAAATCTGCAT 422 >seq119621 Length=933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| || || || || || | ||| | | | || || Sbjct 697 ACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 638 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || | ||| ||||| | || | ||||||||||| | Sbjct 637 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 578 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | || || || ||||||||||| || || ||||| Sbjct 577 ATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTTTTC 518 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||| || ||||| |||||||| Sbjct 517 CCCGTAAGAGTCTTCACAAATATCTGCAT 489 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||| | ||| || ||| ||| || || || |||||||||| ||| | | | || || Sbjct 926 CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCATCCTC 867 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||||| || || || |||| || ||| || || | |||| |||||||| || Sbjct 866 AAGTTGCTTCCCAGCGAAGATCAATCTCTGCTGGTCTGGTGGAATCCCCTCCTTATCCTG 807 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| ||| ||| | | | || || ||||||||||| || || ||||| Sbjct 806 TATCTTGGCTTTCACATTGTCAATTGTGTCAGAACTCTCCACCTCCAAGGTGATGGTTTT 747 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || | ||| || |||||||||||||| Sbjct 746 TCCTGTAAGAGTCTTCACAAAAATCTGCAT 717 >seq61388 Length=1455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| || || || || || | ||| | | | || || Sbjct 154 ACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 213 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || | ||| ||||| | || | ||||||||||| | Sbjct 214 AGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 273 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | || || || ||||||||||| || || ||||| Sbjct 274 ATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATTGTTTTC 333 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||| || ||||| |||||||| Sbjct 334 CCCGTAAGAGTCTTCACAAATATCTGCAT 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380351963437866