Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq90076 127 4e-24 >seq90076 Length=2428 Score = 127 bits (140), Expect = 4e-24 Identities = 376/574 (66%), Gaps = 7/574 (1%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| || || || | ||| | || ||||| || ||| | | |||| ||| Sbjct 2019 TAGAGCAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAG 1960 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CC 48240 ||| | || ||||| | || | || ||| ||||| || ||||| || |||| || Sbjct 1959 AAGGTTAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGC-GCAAAAGCTTCC 1901 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT 48300 |||||||| || || ||||| ||||| || | || | ||| |||| | || Sbjct 1900 CGAGAAGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGA 1841 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 ||| |||||| || ||||| | ||||| || || ||| |||| ||| || Sbjct 1840 GCCGTC---GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTC 1784 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 ||||| |||||||| | || || | | ||| | ||||| ||| || Sbjct 1783 GATGGCGCGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAG 1724 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 | |||||| || ||||| | ||||| || ||||||||||| || |||||||| | ||| Sbjct 1723 GGAGTACATTTCGGAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGC 1664 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATC 48540 ||| || || |||||| | ||| || | ||||| || || || || || Sbjct 1663 CTCGGCGACTTGGACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTC 1604 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || |||||||| ||||| || ||| ||| || ||||| ||| || || Sbjct 1603 GGAGGCGGCGAAGAAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAG-GC 1545 Query 48601 ATT-CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 || |||| | | || | || ||| ||||| ||| | ||||| || || || Sbjct 1544 TTTCCCAGTGACGGAGATCCTGCGACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCT 1485 Query 48660 GTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| |||||||| |||| || | ||| || Sbjct 1484 CGGCTTTCTTGTACATCTCCCAGATTTGCGGGTA 1451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930063982369280