Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq7711 100 2e-16 seq119621 89.7 4e-13 seq61388 89.7 4e-13 seq55405 82.4 6e-11 >seq7711 Length=5731 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || ||||| |||| || || ||||||||| ||| || ||| Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| ||||| || || | || ||||||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || || || ||||| ||| | || |||| ||||||||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||||||||| ||||| || || Sbjct 251 ATTCAAAAAGAGTCTACCCTTCA 273 >seq119621 Length=933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || |||||||| || || ||| |||| || Sbjct 261 ATGCAAATCTTTGTAAAAACCCTGACTGGTAAAACAATAACTTTGGAAGTGGAAAGCTCC 320 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| |||||| ||||| ||||| | || ||| || Sbjct 321 GACACCATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 380 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||||||| | || ||| | ||| | || || |||||| Sbjct 381 CAGAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTATAAC 440 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || ||| |||| Sbjct 441 ATCCAAAAGGAGTCAACCCTTCACTTGGT 469 >seq61388 Length=1455 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || |||||||| || || ||| |||| || Sbjct 590 ATGCAAATCTTTGTAAAAACCCTGACTGGTAAAACAATAACTTTGGAAGTGGAAAGCTCC 531 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| |||||| ||||| ||||| | || ||| || Sbjct 530 GACACCATTGACAACGTCAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 471 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||||||| | || ||| | ||| | || || |||||| Sbjct 470 CAGAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTATAAC 411 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || ||| |||| Sbjct 410 ATCCAAAAGGAGTCAACCCTTCACTTGGT 382 >seq55405 Length=4719 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || | ||| || ||| |||| Sbjct 2734 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAGACAGTCACCTTGGAGGTCGAAAGTTCA 2675 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || || |||||||| | || |||||| Sbjct 2674 GACACAATAGATAATGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCAGATCAG 2615 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| ||||| || | |||||| | || | || ||||||||| Sbjct 2614 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTATAAC 2555 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || |||||| |||| | ||| | || ||||| || Sbjct 2554 ATCCAAAAGGAATCCACACTGCACTTGGTGCTGAGACTGCGCGGAGGAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424750801537818