Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq47021 113 5e-20 seq28723 102 1e-16 seq2715 91.5 2e-13 >seq47021 Length=9578 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| | ||||||||||||| | || || | || | Sbjct 3824 CGGGATTTTGACTATGATTACTTTGGCTTTAAAACCCTTGAGAGGTCTTACCTCTTAAAG 3765 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||||| ||| |||| || || || || Sbjct 3764 GTTC-AAGGGAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTATTGGAAT 3706 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 3705 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 3646 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || || ||| | || || || ||||| ||||| || || ||||||||| Sbjct 3645 CACGCATGCATCTCCCACACTTTTCAACGCTGGAACTCCGAGACCGCAG 3597 >seq28723 Length=7348 Score = 102 bits (112), Expect = 1e-16 Identities = 191/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 |||||| || || |||||| | | || |||| | || || ||| | || ||||| Sbjct 3209 GCCAGGAACTGGGAAGACCTTATTGGCTAGAGCAGTTGCTGGAGAAGCCGGCGTGCCATT 3150 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || || | ||||| ||| ||||||||||||| ||||| ||| || Sbjct 3149 TTTCTCTTGTGCGGCATCAGAATTTGTTGAGTTGTTTGTTGGTGTTGGTGCATCAAGAGT 3090 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || ||| |||||||||||| || |||||||| || Sbjct 3089 GAGGGATTTGTTTGAGAAGGCGAAATCAAAGGCACCATGTATTGTGTTTATTGATGAAAT 3030 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | || | | || || | | | | || |||||| || ||||| Sbjct 3029 TGATGCTGTGGGGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAATGATGAAAGAGAG 2972 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || ||||||||||| || | || || |||||||| ||| Sbjct 2971 CAGACAATTAATCAGCTTTTGACTGAAATGGATGGTTTT 2933 >seq2715 Length=12174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 314/487 (64%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || |||||| || ||| | || | ||| | ||||| || ||||| Sbjct 1758 TGATGTTGCAGGAGTTGACGAAGCTAAACAAGATTTCATGGAGGTGGTGGAGTTCCTCAA 1817 Query 175251 GCAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 | | || ||||||| | | || || || || || ||||| ||||| | | Sbjct 1818 GAAGCCAGAGAGAT-TCACAGCTGTCGGAGCTCGCATTCCTAAAGGCGTTCTTCTTGTTG 1876 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || ||||| || |||||||| || || ||| || || || || ||| | || | Sbjct 1877 GTCCTCCAGGAACTGGAAAGACTCTTCTAGCCAAGGCAATTGCTGGGGAAGCTGGAGTTC 1936 Query 175370 CATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 |||| || || | | | ||||| ||||||||||||||||| ||||| Sbjct 1937 CATTTTTCTCTATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTC 1996 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | || || ||||| || | | ||| || ||| || || ||||| || |||||| Sbjct 1997 GAGTCCGAGATCTGTTCAAGAAGGCCAAGGAGAATGCTCCTTGCATTGTGTTTGTTGATG 2056 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| || || ||| | | |||| | | || ||||| || |||| Sbjct 2057 AAATTGATGCTGTTGGACGACAAAGAGGAACTGGCATTGGGGGAGGGAATGATGAAAGAG 2116 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 | ||||| |||| || || | || || |||||||| || || | | ||||| || Sbjct 2117 AGCAAACGCTTAACCAGCTTTTGACAGAAATGGATGGTTTCGAGGGTAACACTGGTATCA 2176 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | || ||||| || ||||| | | || || |||||| ||| | | | ||||| | Sbjct 2177 TTGTGATTGCAGCAACTAACAGGGCAGACATACTTGATTCTGCCTTATTGAGGCCGGGAC 2236 Query 175670 GTTTTGA 175676 |||| || Sbjct 2237 GTTTCGA 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595628943968960