Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7711 131 3e-25 seq95098 127 4e-24 seq87541 104 4e-17 seq119621 100 5e-16 seq61388 100 5e-16 seq35333 86.0 1e-11 >seq7711 Length=5731 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | |||| |||||| ||| ||||| || | || || | | | Sbjct 285 CGAAGGACAAGATGAAGGGTAGACTCTTTTTGAATGTTATAATCTGCCAAGGTGCGACCA 226 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||| ||||| || | |||||||||||| || || || ||||| || Sbjct 225 TCCTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGGATCCCTTCCTTG 166 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | || |||||| |||||| ||| || || || || || Sbjct 165 TCTTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGAACTCTCGACCTCGAGGGTAATG 106 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| ||||| || ||||||||||| Sbjct 105 GTCTTCCCTGTTAGGGTTTTGACGAATATTTGCAT 71 >seq95098 Length=1037 Score = 127 bits (140), Expect = 4e-24 Identities = 123/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT-CAGGAGGTATTCCTTCTT 193263 |||||||| ||| || ||||||||||| || | || || | | || || |||||||| | Sbjct 690 ATCGTCTAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCCNGGGGGAATTCCTTCCT 749 Query 193264 TATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTA 193323 ||||||| || || | || | ||| ||| ||||||||| ||||||||| ||||||| Sbjct 750 TATCTTGAATCTTTGCCTTAACATTATCAATTGTATCGGAACTCTCAACTTCAAGAGTTA 809 Query 193324 TAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| ||||| ||||| ||||| |||||||| Sbjct 810 TCGTCTTACCCGTTAGGGTTTTAACAAAAATTTGCAT 846 >seq87541 Length=1860 Score = 104 bits (114), Expect = 4e-17 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| || |||||| || || | || || || || || || | | | Sbjct 33 ATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGC 92 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || ||||| |||||||| || ||||| || ||||| || | ||| ||| ||| Sbjct 93 TGTTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATGGTA 152 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCG--TTTTTACAAATATTT 193356 || ||||||||||| |||| ||||| || || || ||||| | |||| || || || | Sbjct 153 TCAGAAGACTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGNNTTTTCACGAAGATCT 212 Query 193357 GCAT 193360 |||| Sbjct 213 GCAT 216 >seq119621 Length=933 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | ||| || || |||||||| | | || | | | Sbjct 475 CGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCA 416 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || |||||||| || ||||| || || || || || || || || Sbjct 415 TCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 356 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | || ||| || ||||| || ||||| | |||||| Sbjct 355 TCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATT 296 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||||||||| |||||||| Sbjct 295 GTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq61388 Length=1455 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | ||| || || |||||||| | | || | | | Sbjct 376 CGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGACCA 435 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || |||||||| || ||||| || || || || || || || || Sbjct 436 TCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 495 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | || ||| || ||||| || ||||| | |||||| Sbjct 496 TCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATT 555 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||||||||| |||||||| Sbjct 556 GTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| ||||| || | || | ||| || || |||||||| | | || | | Sbjct 832 CGAAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGTCCA 891 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || ||||| || || || || || || || || || ||||| || Sbjct 892 TCCTCAAGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATCCCTTCCTTG 951 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | |||| ||| || || ||||| || || || ||||| ||| Sbjct 952 TCCTGAATTTTTGCCTTTACATTGTCGATGGTGTCGGAGCTTTCCACCTCAAGAGTGATA 1011 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| |||||||| Sbjct 1012 GTCTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1046 >seq35333 Length=5286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193143 AATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTA 193202 || ||||| |||||||| | || | ||||| || |||||||||| || || | Sbjct 183 AAACGAAGAACCAGATGAAGAGTTGATTCTTTTTGGATGTTATAGTCGGCCAAGGTCCGG 124 Query 193203 GAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCT 193262 || || ||||| ||||||||||| || || || || || || || || |||||||| Sbjct 123 CCGTCTTCCAATTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGCGGGATTCCTTCC 64 Query 193263 TTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTT 193322 || ||||| || || | || | ||| |||||||||||| ||| || || || || Sbjct 63 TTGTCTTGAATCTTTGCCTTCACATTGTCTATAGTATCGGAACTCTCCACCTCAAGCGTG 4 Query 193323 AT 193324 || Sbjct 3 AT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898235847433440