Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq55405 104 3e-17 seq7711 98.7 1e-15 >seq55405 Length=4719 Score = 104 bits (114), Expect = 3e-17 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || | || || || |||||| ||| Sbjct 2734 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAGACAGTCACCTTGGAGGTCGAAAGTTCA 2675 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| || || ||||||||||| ||||| || ||||| || Sbjct 2674 GACACAATAGATAATGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCAGATCAG 2615 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| |||||| || || | ||||||||| Sbjct 2614 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTATA-- 2557 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 2556 ACATCCAAA 2548 Score = 102 bits (112), Expect = 1e-16 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || ||||||||||||||||| || | || || || | ||| Sbjct 2507 AATGCAGATTTTTGTTAAGACCTTGACTGGAAAAACTATCACCCTGGAGGTTGAGGGTTC 2448 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | | || || ||||| |||||| || || || ||||| || || || || || Sbjct 2447 GGACACTGTTGATAATGTGAAGGCTAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 2388 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | ||| |||||||| || || ||| | ||||| | ||||| | Sbjct 2387 GCAGAGGTTGATCTTTGCTGGTAAGCAACTGGAGGATGGGCGCACTTTGGCTGATTACA- 2329 Query 156002 TATATCCAAA 156011 ||||||||| Sbjct 2328 -ATATCCAAA 2320 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| || |||||||| || ||||| || ||| Sbjct 2962 ATGCAAATCTTTGTCAAGACTCTTACTGGGAAGACTATTACCTTGGAAGTTGAGAGTTCA 2903 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| || |||||||| |||||||| || Sbjct 2902 GATACCATTGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCAGATCAG 2843 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| || || | | || || ||| Sbjct 2842 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCTGACTACAAT 2783 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || ||||| || ||| Sbjct 2782 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 2753 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||||||||| || || ||||| || |||| Sbjct 3190 ATGCAGATCTTTGTGAAAACCCTTACTGGAAAAACTATCACTTTGGAAGTTGAGAGTTCT 3131 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| || ||||| || || || || ||||| || Sbjct 3130 GACACTATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 3071 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||| || |||||||| |||||| Sbjct 3070 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAAGAT 3035 >seq7711 Length=5731 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | || || || || ||||| | || ||||| ||| Sbjct 71 ATGCAAATATTCGTCAAAACCCTAACAGGGAAGACCATTACCCTCGAGGTCGAGAGTTCC 130 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| || || ||||| || ||||| || || ||||| ||| Sbjct 131 GACACTATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 190 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||| | ||| || |||||| | || ||| | || || |||||||||| Sbjct 191 CAGAGACTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCTTGGCAGATTATAAC 250 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 251 ATTCAAAAAGAGTCTACCCTTCAT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730718002527200