Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq55405 140 6e-28 seq7711 113 9e-20 seq61388 105 1e-17 seq119983 96.9 7e-15 seq119621 91.5 3e-13 seq95098 89.7 1e-12 seq90076 89.7 1e-12 seq51752 89.7 1e-12 >seq55405 Length=4719 Score = 140 bits (154), Expect = 6e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | || || | || | ||| ||||||| ||| || |||||| ||||| Sbjct 2276 AAAACCACCACGCAGGCGAAGGACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATC 2335 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| |||| ||| |||||||||||||| || ||||| |||||||| Sbjct 2336 AGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG 2395 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || || || |||||| || |||||| | || || || || Sbjct 2396 TGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATTATCAACAGTGTCCGAACCCTC 2455 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || ||||| ||||| || || |||| ||| ||||||||| Sbjct 2456 AACCTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAAATCTGCATT 2507 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || || || | || | ||| || ||| ||||| ||| Sbjct 3189 ATACCACCCCTGAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCA 3248 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| |||| ||| |||||||||||||| | ||||| || |||||| Sbjct 3249 GCAAGTGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGT 3308 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| ||| |||||| || | || || ||| Sbjct 3309 GGGATCCCTTCCTTATCCTGGATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCA 3368 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| ||||| || | ||||||| ||| || ||||| Sbjct 3369 ACCTCAAGGGTTATGGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||| || | || || || | || | || || ||| || |||||| Sbjct 2961 ATACCACCTCGAAGGCGAAGCACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCA 3020 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || ||||||||||| | |||||| || || ||| Sbjct 3021 GCAAGAGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGGTCTGGT 3080 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || ||||| || ||||| |||| || || || Sbjct 3081 GGGATACCCTCCTTATCCTGAATTTTGGCCTTGACATTGTCAATAGTGTCAGAACTCTCA 3140 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| ||||| | ||||| | ||| |||||||| Sbjct 3141 ACTTCCAAAGTGATAGTTTTTCCAGTAAGGGTTTTCACAAAGATCTGCAT 3190 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || || || | || | ||| || |||||| || ||| Sbjct 2733 ATACCTCCACGAAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCA 2792 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || |||||||||||||| | ||||| ||||| || Sbjct 2793 GCAAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCTGGA 2852 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||| |||||| || | |||||| || Sbjct 2853 GGGATGCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCAATGGTATCTGAACTCTCA 2912 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| | || || | ||| || ||||| Sbjct 2913 ACTTCCAAGGTAATAGTCTTCCCAGTAAGAGTCTTGACAAAGATTTGCAT 2962 >seq7711 Length=5731 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || | ||| | |||| |||||| || |||||||| Sbjct 300 ATACCTCCACGGAGACGAAGGACAAGATGAAGGGTAGACTCTTTTTGAATGTTATAATCT 241 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| ||||| || || ||||||||||| | |||||||||||| ||| Sbjct 240 GCCAAGGTGCGACCATCCTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGT 181 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || ||| |||| || || || Sbjct 180 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGAACTCTCG 121 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || |||| ||||| | ||||| ||||| Sbjct 120 ACCTCGAGGGTAATGGTCTTCCCTGTTAGGGTTTTGACGAATATTTGCAT 71 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | ||| || || ||||| |||| Sbjct 754 ACCACCACGAAGACGAAGGACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGC 695 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||| || |||||||| ||||| | ||||| ||||| ||||| Sbjct 694 AAGGGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGG 635 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || || |||||| || | ||| || || || Sbjct 634 AATCCCTTCTTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCAC 575 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || || || || || || || |||| |||||||||||| Sbjct 574 CTCCAAGGTGATCGTCTTTCCTGTCAAAGTCTTAACAAATATCTGCAT 527 >seq61388 Length=1455 Score = 105 bits (116), Expect = 1e-17 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | || | ||| || ||| ||||| ||| Sbjct 817 ATACCACCCCTGAGACGAAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCA 876 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | |||||| ||||||||||| || || || || || ||| Sbjct 877 GCAAGGGTACGTCCATCCTCAAGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCTGGT 936 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| |||||||| || | || || ||| Sbjct 937 GGGATCCCTTCCTTGTCCTGAATTTTTGCCTTTACATTGTCGATGGTGTCGGAGCTTTCC 996 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || ||||| || || || ||||| | ||||| | ||| || |||| | |||||||| Sbjct 997 ACCTCAAGAGTGATAGTCTTTCCAGTGAGGGTTTTTACAAAGATTTGCA-TCTATTAGAA 1055 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | ||| || ||| ||||| ||| Sbjct 361 ATGCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCA 420 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | |||||| |||||||| || || ||||| || || ||| Sbjct 421 GCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGT 480 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || |||||| || || || || | || || ||| Sbjct 481 GGGATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCC 540 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||||||||| | ||||| | ||| || ||||| Sbjct 541 ACTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || || || | || | ||||| ||| ||||| || Sbjct 133 ATACCACCACGGAGGCGAAGAACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCT 192 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || || ||||||||||| | ||||| ||||| ||| Sbjct 193 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGT 252 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| ||||||||| |||| || || || Sbjct 253 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCC 312 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || ||||| || || | || || | |||||||||||| Sbjct 313 ACCTCCAAAGTGATTGTTTTCCCCGTAAGAGTCTTCACAAATATCTGCAT 362 >seq119983 Length=969 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | ||| || || ||||| |||| Sbjct 414 ACCACCACGAAGACGAAGGACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGC 355 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||| || |||||||| ||||| | ||||| ||||| ||||| Sbjct 354 AAGGGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGTGG 295 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || || |||||| || | ||| || || || Sbjct 294 AATCCCTTCTTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCAGAACTCTCCAC 235 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || || || || || || || |||| |||||||||||| Sbjct 234 CTCCAAGGTGATCGTCTTTCCTGTCAAAGTCTTAACAAATATCTGCAT 187 >seq119621 Length=933 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | ||| || ||| ||||| ||| Sbjct 490 ATGCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCA 431 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | |||||| |||||||| || || ||||| || || ||| Sbjct 430 GCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGT 371 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || |||||| || || || || | || || ||| Sbjct 370 GGGATACCCTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCC 311 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||||||||| | ||||| | ||| || ||||| Sbjct 310 ACTTCCAAAGTTATTGTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || || || | || | ||||| ||| ||||| || Sbjct 718 ATACCACCACGGAGGCGAAGAACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAGTCT 659 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || || ||||||||||| | ||||| ||||| ||| Sbjct 658 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGT 599 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| ||||||||| |||| || || || Sbjct 598 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTTACATTGTCAATAGTGTCAGAGCTCTCC 539 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || ||||| || || | || || | |||||||||||| Sbjct 538 ACCTCCAAAGTGATTGTTTTCCCCGTAAGAGTCTTCACAAATATCTGCAT 489 >seq95098 Length=1037 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||| ||||||||||| | | ||| ||||||||||| |||||||| | Sbjct 460 CATCCTCAAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATTCCTTCCT 519 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| |||||| || ||||| || | || || ||| ||||| | || | Sbjct 520 TATCTTGGATTTTAGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACTTCCAAGGTGA 579 Query 192500 TGGTTTTACCAGTTAATGTTTTAA-TAAATATCTGCAT 192536 | || |||||||| | || |||| ||| || ||||| Sbjct 580 TTGTCTTACCAGTGAGGGTCTTAACNAAAAATTTGCAT 617 >seq90076 Length=2428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 || ||||| ||||| || | |||||||| | || || || || || || ||| Sbjct 2013 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 1954 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACTAGAAAA 49939 ||||| ||||||||||| | |||||| ||||||||||||| |||||| || | || || Sbjct 1953 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 1895 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCC 49981 |||||| || || || || || || || |||| || ||||| Sbjct 1894 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC--GCTCC 1855 >seq51752 Length=12828 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 || ||||| ||||| || | |||||||| | || || || || || || ||| Sbjct 505 AAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAGAAGGTT 446 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACTAGAAAA 49939 ||||| ||||||||||| | |||||| ||||||||||||| |||||| || | || || Sbjct 445 AATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCCCGAGAA 387 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCC 49981 |||||| || || || || || || || |||| || ||||| Sbjct 386 GAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC--GCTCC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982888888961700