Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq55405 116 7e-21 seq90076 91.5 3e-13 seq51752 91.5 3e-13 seq119621 86.0 1e-11 seq95098 86.0 1e-11 seq61388 86.0 1e-11 >seq55405 Length=4719 Score = 116 bits (128), Expect = 7e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||| ||||||| ||| || ||||| ||||| Sbjct 2276 AAAACCACCACGCAGGCGAAGGACGAGATGCAAAGTAGACTCCTTTTGGATATTGTAATC 2335 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| ||| ||||||||||| || || ||||| || ||||| Sbjct 2336 AGCCAAAGTGCGCCCATCCTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG 2395 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||| || || || |||||| || |||||| | ||| || || || Sbjct 2396 TGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATTATCAACAGTGTCCGAACCCTC 2455 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || ||||| ||||| || || |||| || ||||||||| Sbjct 2456 AACCTCCAGGGTGATAGTTTTTCCAGTCAAGGTCTTAACAAAAATCTGCATT 2507 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| ||||||||||| || | ||||| ||||||||||| || ||||| ||| Sbjct 3264 TCCTCCAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTA 3323 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| ||| |||||| || || || || ||| || || || || ||| Sbjct 3324 TCCTGGATTTTTGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATG 3383 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || | ||||||| || || ||||| Sbjct 3384 GTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 3418 >seq90076 Length=2428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || ||||| ||||| || | || ||||| | || || || || || Sbjct 2019 TAGAGCAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAG 1960 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACT 39235 || |||||||| ||||||||||| | |||||| ||||||||||||| |||||| || | Sbjct 1959 AAGGTTAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCC 1901 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCC 39283 || |||||||| || ||||| || || || || |||| || ||||| Sbjct 1900 CGAGAAGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC--GCTCC 1855 >seq51752 Length=12828 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || ||||| ||||| || | || ||||| | || || || || || Sbjct 511 TAGAGCAAGCATGCGAAATCGCAGTGAAGTCCCTCGTCTCGCGAGATTAACTCGTTTGAG 452 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA-CTACT 39235 || |||||||| ||||||||||| | |||||| ||||||||||||| |||||| || | Sbjct 451 AAGGTTAATCCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTG-CGCAAAAGCTTCC 393 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCC 39283 || |||||||| || ||||| || || || || |||| || ||||| Sbjct 392 CGAGAAGAATATTCCTTCCACGCAAGCGAAGGCAATTAGTC--GCTCC 347 >seq119621 Length=933 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||||||||| || ||||| ||||| ||||| || || || || Sbjct 415 TCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 356 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || || || || || || || ||| ||||| | ||| || Sbjct 355 TCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATT 296 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| | ||||| | || || ||||| Sbjct 295 GTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 261 >seq95098 Length=1037 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 |||||| |||||| ||||| | | || | |||| |||| ||||| ||||| || Sbjct 195 CTCTTTCTGAATATTGTAATCAGCGAGAGTCCTACCGTCCTCCAGCTGTTTCCCAGCNAA 254 Query 171938 AATTAATC-TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACAT 171996 || ||| | ||||||| || ||||| || || || || || || || ||| ||| |||| Sbjct 255 AAATAAGCCTCTGTTGATCTGGTGGGATCCCCTCCTTGTCCTGGATCTTAGCTTTCACAT 314 Query 171997 TAGTTATAGTATCTGACGATTCTACTTC-TAGAGTAATGGTTTTACCAGTTAATGTTTTA 172055 || || || || || || || || | ||| || || || ||||||||||| || Sbjct 315 TATCGATCGTGTCAGAGCTCTCCACCTCCNAAAGTTATCGTCTTCCCAGTTAATGTCTTC 374 Query 172056 ATGAATATCTGCATT 172070 | || ||||||||| Sbjct 375 ACAAAGATCTGCATT 389 >seq61388 Length=1455 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||||||||| || ||||| ||||| ||||| || || || || Sbjct 436 TCCTCAAGTTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 495 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || || || || || || || ||| ||||| | ||| || Sbjct 496 TCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAAGTTATT 555 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| | ||||| | || || ||||| Sbjct 556 GTTTTACCAGTCAGGGTTTTTACAAAGATTTGCAT 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903708804183600