Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7588 136 1e-26 seq28723 132 1e-25 seq47681 107 6e-18 seq2715 104 7e-17 seq8125 93.3 1e-13 seq49401 89.7 2e-12 seq47021 89.7 2e-12 >seq7588 Length=9051 Score = 136 bits (150), Expect = 1e-26 Identities = 264/385 (69%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 288973 GTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC----CGAATCGCTCCttttttt 289028 ||||| ||||||||||||||| |||| |||| | | || || || | | | Sbjct 6269 GTTTGCTCCCTTTCATCATTT---CCTC------CACCAATTCCAGTCCCT-CTCTGTCT 6318 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || |||||||| || || ||||| |||| || || || ||||| |||| | Sbjct 6319 TCCCACAGCATCTATCTCATCAATAAAAACCAAGCATGGCGAATTCGCCTTCGCCTTGTT 6378 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || ||||| || || || || || | ||||||| ||||||||| || || || | Sbjct 6379 GAACAAATCTCTCACTCGTGAAGCGCCTACACCAACAAACATTTCTATGAACTCTGAGCC 6438 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| || ||||| || ||| || || |||| |||| ||||||| | || || Sbjct 6439 TGATAGAGAAAAGAATGGAACTCCTGCCTCTCCAGCTATTGCCTTCGCCAGCAACGTTTT 6498 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTT-TTGCCCCAGCAGACT 289267 ||||| || ||||| || | || || || |||||||| | || |||| ||| | | Sbjct 6499 CCCTGTCCCCGGTGGCCCTACCAACAGTAC-CCCTTTGGGAATTCTTGCACCAACTGCAG 6557 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | ||||||| ||| |||| || |||| ||||| |||| || || | ||||| |||| Sbjct 6558 CAAATTTCTCCGGGTTCTTCAAGAATTGGACAATCTCCTGAAAGTCTTGCTTTGCTTCAT 6617 Query 289328 CACATCCTGCTACATCAGCAAAAGT 289352 || ||| || ||||| |||| || Sbjct 6618 CAACTCCAGCAACATCCTCAAATGT 6642 >seq28723 Length=7348 Score = 132 bits (146), Expect = 1e-25 Identities = 358/535 (67%), Gaps = 16/535 (3%) Strand=Plus/Plus Query 288823 ACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGG 288882 ||||||||| |||| ||| ||| |||||||| |||| | || || | Sbjct 2817 ACATCAGGCCTGTCCACTGTTACCTGCCTGTCAAACCTCCCAGGCCTCAACAAAGCAGAA 2876 Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGG--TTTGCTTAA 288940 || | || ||| | |||||| || || ||||| |||| || | | | ||| | || Sbjct 2877 TCAAGTACATCTGGTCTGTTAGTAGCGGCCAACACAATAACAC---CAGAATTTCCAGAA 2933 Query 288941 AT-CCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 | |||||||| || |||| ||||||| ||| || || |||||||||||| ||| Sbjct 2934 AAACCATCCATTTCAGTCAAAAGCTGATTAATTGTCTGCTCTCTTTCATCATTTCCTCCT 2993 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 2994 CC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACACA 3047 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | ||| || | ||| | |||| | |||| || || || || | ||||| |||| | Sbjct 3048 ATACATGGTGCCTTTGATTTCGCCTTCTCAAACAAATCCCTCACTCTTGATGCACCAACA 3107 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| ||| || |||||||| || || | || || | |||| || ||||| Sbjct 3108 CCAACAAACAACTCAACAAATTCTGATGCCG-CACAAGAGAAAAATGGCACGCCGGCTTC 3166 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || ||||| || |||| | ||||| || ||||| || ||||| |||||| ||| Sbjct 3167 TCCAGCAACTGCTCTAGCCAATAAGGTCTTCCCAGTTCCTGGCGGTCCAACTAATA-AAC 3225 Query 289239 TCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 ||||| || | ||| || || || | || || ||||| | || || || |||| Sbjct 3226 AACCTTTAGGAATTTTAGCTCCTAAAGCTGTGTACTTATCAGGATTTTTCAAGAAATCTA 3285 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||| | | || ||||||| | ||| || || ||||||||||| || Sbjct 3286 CAACTTCTTGTAACTCCAATTTTGCTTGGTCAGCACCAGCAACATCAGCAAATGT 3340 >seq47681 Length=10123 Score = 107 bits (118), Expect = 6e-18 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || ||||||||| || || || ||||| |||||||| | |||||| || | Sbjct 5040 AATTACCCTTTCTCTTGCCACCTCCTTGGTCAACATAACGAGCAGTGTCATTGAACACCC 5099 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| |||| ||| |||||||| || ||||| ||||| ||||||| || | || Sbjct 5100 GCAGCATTGGAACAATTCCATTGGACGTCCCATTTGTTCCACGAATATAACTGCCTGTTG 5159 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| |||| Sbjct 5160 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACATT 5219 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 5220 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 5262 >seq2715 Length=12174 Score = 104 bits (114), Expect = 7e-17 Identities = 308/471 (65%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATC 288947 ||| || || ||||| |||||||| | |||| ||| | | || || ||||| Sbjct 2208 TATGTCTGCCCTGTTAGTTGCTGCAATCACAATGATACCAGTGTTACCCTCGAAACCATC 2149 Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC 289007 ||| ||| |||| || ||||| ||||| || ||||||||||| |||| Sbjct 2148 CATTTCTGTCAAAAGCTGGTTAAGCGTTTGCTCTCTTTCATCATTC---CCTC------- 2099 Query 289008 ACCCGAATCGC---TCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 ||| ||| | |||| ||| | ||||||||||||||||| |||| || | | Sbjct 2098 -CCCCAATGCCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATG 2040 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || |||| ||| | | || | || | |||| || || ||||| |||| |||| Sbjct 2039 CAAGGAGCATTCTCCTTGGCCTTCTTGAACAGATCTCGGACTCGAGATGCACCAACACCA 1980 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| |||||| | |||| | || | |||| || ||||| || Sbjct 1979 ACAAACATCTCAACAAACTCAGAACCTGATA-TAGAGAAAAATGGAACTCCAGCTTCCCC 1921 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 || | |||| | || ||||| ||||| || ||||| || || || | | ||||| || Sbjct 1920 AGCAATTGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACGCC 1861 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 || || | || || ||| | || |||| || |||| | || || || | Sbjct 1860 TTTAGGAATGCGAGCTCCGACAGCTGTGAATCTCTCTGGCTTCTTGAGGAACTCCACCAC 1801 Query 289302 TTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || | ||| || || ||| |||||| |||||| |||| || Sbjct 1800 CTCCATGAAATCTTGTTTAGCTTCGTCAACTCCTGCAACATCATCAAATGT 1750 >seq8125 Length=12339 Score = 93.3 bits (102), Expect = 1e-13 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || |||||||| || | || || | | |||||| || || | Sbjct 10271 ACCAATTGCATCTATCTCATCAATGAAGATTATACTAGGTGCACATTGTCTTGC--TTCC 10214 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || | ||| || | |||| ||||| ||||||| |||| || | || || ||| Sbjct 10213 TGAAACAAATTTCTCACCCTAGATGGTCCAACACCAACAAACATCTCCATGAAATCTGAA 10154 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | |||| | || | ||| | ||| | || ||||| ||| | || ||||| || Sbjct 10153 CCAGATA-TAGACAGGAAAGGCACACCAGACTCCCCTGCAGTTGCTTTTGCTAGAAGGGT 10095 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 || || || || ||||| || | || ||| | || || || | |||||| ||| Sbjct 10094 TTTTCCAGTGCCTGGTGGGCCAACCAAAAGAGCACCTTTCGGAATTTTTGCTCCAAGTTC 10035 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| |||| ||| || | | ||| | |||| ||| | ||| | |||||||| Sbjct 10034 CTCATACTTCTTGGGGTTCCTGAGAAAGTGCACAAACTCCATGATTTCTTGCTTTGCCTC 9975 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 9974 ATCACAGCCAGCAACATC 9957 >seq49401 Length=20421 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| |||||||| ||||| |||||| | ||| | | | ||||| || ||| Sbjct 17850 ACATACATGGACTCTGTATGCATCACTTTGATCAAACAATCTTTCCTTGAGAAAATGAGC 17791 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||||||||| || |||||||| || || ||||| |||||||| || Sbjct 17790 AGCACCATGGGCAATCATACAATCTCGTTCCATTTCTCCAAATCGAAGTCCACCATCACG 17731 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | || || |||||||| | || | | | | |||||| || ||| Sbjct 17730 AGATCGTCCTTCAGCAGGCTGCCTTGTCAAAATCTGGACAGGACCCCGTCCTCGAGAATG 17671 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 | |||||||| ||||||||||| | | ||||| | | |||||| | ||| || Sbjct 17670 TATCTTATCATCCACCATATGCTTCAATCTTTGGTAATAAGTGGGACCAAGGAATAT 17614 >seq47021 Length=9578 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 ||||||| || ||||||||| || ||||| ||||| || ||||| | ||| || || | Sbjct 3256 AACTACCCTTTCTCTTGCCACCTCCTTGATCAACATAACGGGCAGTATCATTAAACACTC 3315 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| | |||| |||| || Sbjct 3316 GCAGCATGGGGACAATGCCATTAGATGTTCCATTTGTTCCACAGATATAACTTCCAGTTG 3375 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 || | ||||||||| | |||||||| || | |||| || ||| || | Sbjct 3376 CACGGATATTATGAATTGAGACGCCAATACCTCCAGCTGATTTGCTGATAACAGCACACT 3435 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||| ||| ||| |||| ||| Sbjct 3436 CCTTCAAAGTATCATAGATTCCTTCGATACTATCTTCTTTCAT 3478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469438856673854