Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Azadirachta_20indica_20[genbank_20GCA_5F000439995.3_202015-06-16] 126,142 sequences; 261,457,759 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq90076 174 2e-37 seq51752 136 5e-26 seq78272 96.9 4e-14 seq87527 86.0 8e-11 seq68814 86.0 8e-11 >seq90076 Length=2428 Score = 174 bits (192), Expect = 2e-37 Identities = 198/262 (76%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||| |||||||||||||| || ||||| | |||| || |||||| Sbjct 1710 GAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGG 1651 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| || || ||| |||||||||||| ||||||||| Sbjct 1650 ACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAG 1591 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| | || ||||| |||||| | | || |||||| |||| Sbjct 1590 AAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTCAGAGGTAAGGCTTTCCCAGT-GACG 1532 Query 869813 GTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | | ||| | ||| || ||||| || ||||| | ||| |||||||| || |||| Sbjct 1531 GAGATCCTGCG-ACAAGTCGACTTCCTCCGCCGTCCAAAACGATGCCTCGGCTTTCTTGT 1473 Query 869871 ACATCTCCCATACTTGCTGGTA 869892 |||||||||| | |||| |||| Sbjct 1472 ACATCTCCCAGATTTGCGGGTA 1451 Score = 134 bits (148), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || |||||||| || ||||| || || |||||||| || Sbjct 1950 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 1891 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| || ||| | || || ||||| || || || ||| ||| || Sbjct 1890 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC---- 1835 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||| | | ||||| | ||||||||| || |||||||||| ||||||||| Sbjct 1834 --GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 1777 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||||||| |||||| | | ||| |||| ||||| |||| || || || || Sbjct 1776 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTA 1718 >seq51752 Length=12828 Score = 136 bits (150), Expect = 5e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||| |||||||||||||| || ||||| | |||| || |||||| Sbjct 202 GAGTGAATGTTCTCGATTGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCGGCGACTTGG 143 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| | |||| || || ||| |||||||||||| ||||||||| Sbjct 142 ACTTCTTTCATGAACCTGGCGGCGAGATTTTCGAGAACGATGCCGTCGGAGGCGGCGAAG 83 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTC 869787 || || |||||||| | || ||||| |||||| Sbjct 82 AAGGCGAGGACGTGAGTAATGAAGTGTTTCTCGTC 48 Score = 134 bits (148), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || |||||||| || ||||| || || |||||||| || Sbjct 442 CCCGGCATTAATCCGCGCTTTTTTAGCCAAAATATTGCGCAAAAGCTTCCCGAGAAGAAT 383 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| || ||| | || || ||||| || || || ||| ||| || Sbjct 382 ATTCCTTCCACGCAAGCGAAGGCAATTAGTCGCTCCGCGAATGTCTCGGAGCCGTC---- 327 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||| | | ||||| | ||||||||| || |||||||||| ||||||||| Sbjct 326 --GATCCAATCGAGGGCCCACTTGGCCTTTTTGGCGACGCACGGCACCGTTTCGATGGCG 269 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||||||| |||||| | | ||| |||| ||||| |||| || || || || Sbjct 268 CGGAAGAGGTGGTTCTTTTCTTCGGAGTCTTTGATGTAGGTTTCGAGGAGAAGGGAGTA 210 >seq78272 Length=5241 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| || ||||| ||||| |||||| ||| || |||| || || Sbjct 3564 GCAGCGAACTACCTGAACGTCAAGGGGCTGCTGGATCTTACCTGCCAGACTGTTGCTGAC 3505 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||| | || ||||||||||| ||||| ||| |||||||| Sbjct 3504 ATGATCAAGGGCAAGACTCCAGAGGAGATCCGGAAGACATTTTACATCAAG 3454 >seq87527 Length=6819 Score = 86.0 bits (94), Expect = 8e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || || || || |||||||||||| | |||| || |||| || | |||| || | Sbjct 1966 GCAGCAAATTATCTCGACATCAAGAGTTTGCTGGA-CTTGACCTGTCAAACTGTTGCTGA 1908 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||||||||||| | || ||||| |||||||||||||| |||||||| Sbjct 1907 CATGATCAAGGGCAAGACTCCGGAGGAAATCCGCAAGACCTTCAACATCAA 1857 >seq68814 Length=1719 Score = 86.0 bits (94), Expect = 8e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || || || || |||||||||||| | |||| || |||| || | |||| || | Sbjct 472 GCAGCAAATTATCTCGACATCAAGAGTTTGCTGGA-CTTGACCTGTCAAACTGTTGCTGA 414 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||||||||||| | || ||||| |||||||||||||| |||||||| Sbjct 413 CATGATCAAGGGCAAGACTCCGGAGGAAATCCGCAAGACCTTCAACATCAA 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096787396757014